lammps →
0~20180822.gitb47e49223+dfsg1-2 →
armhf → 2018-09-16 07:55:56
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+================================================================================+
| lammps 0~20180822.gitb47e49223+dfsg1-2 (armhf) Sun, 16 Sep 2018 07:01:15 +0000 |
+================================================================================+
Package: lammps
Version: 0~20180822.gitb47e49223+dfsg1-2
Source Version: 0~20180822.gitb47e49223+dfsg1-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-d2e17c36-9cb7-4500-b719-4ea5bfc4d8af' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.8 MB]
Fetched 23.8 MB in 10s (2401 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'lammps' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/science-team/lammps.git
Please use:
git clone https://salsa.debian.org/science-team/lammps.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 77.2 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main lammps 0~20180822.gitb47e49223+dfsg1-2 (dsc) [2458 B]
Get:2 http://172.17.0.1/private buster-staging/main lammps 0~20180822.gitb47e49223+dfsg1-2 (tar) [77.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main lammps 0~20180822.gitb47e49223+dfsg1-2 (diff) [12.0 kB]
Fetched 77.2 MB in 29s (2693 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/lammps-oSgWQV/lammps-0~20180822.gitb47e49223+dfsg1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/lammps-oSgWQV' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-OWbyaW/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-OWbyaW/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-OWbyaW/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (11.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 71 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15689 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), libeigen3-dev, cmake, fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev
Filtered Build-Depends: debhelper (>= 11~), libeigen3-dev, cmake, fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev
dpkg-deb: building package 'sbuild-build-depends-lammps-dummy' in '/<<BUILDDIR>>/resolver-OWbyaW/apt_archive/sbuild-build-depends-lammps-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-lammps-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ Sources [594 B]
Get:5 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ Packages [670 B]
Fetched 2597 B in 0s (13.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install lammps build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cpp-8 cython debhelper default-libmysqlclient-dev dh-autoreconf
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core g++-8 gcc-7-base gcc-8 gcc-8-base gdal-data gettext
gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0
groff-base hdf5-helpers ibverbs-providers icu-devtools intltool-debian
iso-codes libaec-dev libaec0 libarchive-zip-perl libarchive13
libarmadillo-dev libarmadillo9 libarpack2 libarpack2-dev libasan5 libatomic1
libavahi-client3 libavahi-common-data libavahi-common3 libavcodec-dev
libavcodec58 libavformat-dev libavformat58 libavutil-dev libavutil56
libblas-dev libblas3 libbluray2 libboost-dev libboost1.62-dev libbrotli1
libbsd0 libcairo2 libcap2-bin libcc1-0 libcharls-dev libcharls1
libchromaprint1 libcodec2-0.8.1 libcroco3 libcups2 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
libdatrie1 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev
libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2
libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0
libegl1 libeigen3-dev libelf1 libepsilon-dev libepsilon1 libevdev2
libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1
libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3
libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev
libfreetype6 libfreetype6-dev libfreexl-dev libfreexl1 libfribidi0
libfyba-dev libfyba0 libgbm1 libgcc-8-dev libgcc1 libgdal-dev libgdal20
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgeos-3.6.2 libgeos-c1v5
libgeos-dev libgeotiff-dev libgeotiff2 libgfortran-8-dev libgfortran4
libgfortran5 libgif-dev libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dev
libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles1 libgles2
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-core-dev
libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgme0 libgomp1 libgraphite2-3
libgraphite2-dev libgsm1 libgssapi-krb5-2 libgstreamer-plugins-base1.0-0
libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz-dev libharfbuzz-gobject0
libharfbuzz-icu0 libharfbuzz0b libhdf4-0-alt libhdf4-alt-dev libhdf5-100
libhdf5-cpp-100 libhdf5-dev libhdf5-mpi-dev libhdf5-openmpi-100
libhdf5-openmpi-dev libhwloc-dev libhwloc-plugins libhwloc5 libhyphen0
libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu-le-hb-dev
libicu-le-hb0 libicu60 libinput-bin libinput10 libjbig-dev libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc
libjs-underscore libjson-c-dev libjsoncpp-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1
libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 liblcms2-2 libllvm6.0 libltdl-dev libltdl7
liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmariadbclient-dev
libmariadbclient-dev-compat libmariadbclient18 libminizip-dev libminizip1
libmp3lame0 libmpdec2 libmpg123-0 libmtdev1 libnetcdf-c++4
libnetcdf-cxx-legacy-dev libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200
libnl-route-3-200 libnspr4 libnss3 libodbc1 libogdi3.2 libogdi3.2-dev
libogg-dev libogg0 libopengl0 libopenjp2-7 libopenjp2-7-dev libopenmpi-dev
libopenmpi3 libopenmpt0 libopus0 liborc-0.4-0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre16-3
libpcre2-16-0 libpcre3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpmix2 libpng-dev libpoppler-dev libpoppler-private-dev
libpoppler74 libpopt0 libpq-dev libpq5 libproj-dev libproj13 libpsl5
libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7 libqt5core5a
libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5 libqt5positioning5
libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5sensors5 libqt5webchannel5
libqt5webkit5 libqt5widgets5 librhash0 librsvg2-2 librtmp1 libsensors4
libshine3 libsigsegv2 libsm-dev libsm6 libsnappy1v5 libsodium23 libsoxr0
libspatialite-dev libspatialite7 libspeex1 libsqlite3-dev libssh-gcrypt-4
libssh2-1 libssl1.0.2 libstdc++-8-dev libstdc++6 libsuperlu-dev libsuperlu5
libswresample-dev libswresample3 libswscale-dev libswscale5 libsymspg-dev
libsymspg1 libsz2 libtcl8.6 libthai-data libthai0 libtheora-dev libtheora0
libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtk8.6
libtool libtwolame0 libubsan1 liburiparser-dev liburiparser1 libuv1
libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2
libvorbisfile3 libvoro++1 libvpx5 libvtk6-dev libvtk6-java libvtk6-jni
libvtk6.3 libvtk6.3-qt libwacom-common libwacom2 libwavpack1
libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2
libwebpmux3 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev
libx11-xcb1 libx264-152 libx265-160 libxau-dev libxau6 libxcb-dri2-0
libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev
libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev
libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0
libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev
libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util0 libxcb-xfixes0
libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev
libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev
libxerces-c3.2 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev
libxft2 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev
libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1
libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm-dev libxxf86vm1
libzstd-dev libzstd1 libzvbi-common libzvbi0 m4 man-db mesa-common-dev
mime-support mpi-default-bin mpi-default-dev mysql-common ocl-icd-libopencl1
ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers openmpi-bin
openmpi-common openssh-client pkg-config po-debconf proj-data python
python-asn1crypto python-attr python-autobahn python-automat python-cbor
python-cffi-backend python-concurrent.futures python-configparser
python-constantly python-cryptography python-enum34 python-future
python-hyperlink python-idna python-incremental python-ipaddress python-lz4
python-minimal python-mpi4py python-nacl python-openssl python-pil
python-pkg-resources python-pyasn1 python-pyasn1-modules python-qrcode
python-service-identity python-six python-snappy python-trie python-trollius
python-twisted python-twisted-bin python-twisted-core python-txaio
python-u-msgpack python-ubjson python-vtk6 python-wsaccel
python-zope.interface python2 python2-minimal python2.7 python2.7-minimal
python3 python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal shared-mime-info tcl tcl-dev tcl-vtk6 tcl8.6 tcl8.6-dev tk
tk-dev tk8.6 tk8.6-dev ucf unixodbc-dev uuid-dev voro++-dev vtk6 x11-common
x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-dri2-dev
x11proto-fixes-dev x11proto-gl-dev x11proto-scrnsaver-dev x11proto-xext-dev
x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build gcc-8-locales cython-doc dh-make gcc-8-doc
libstdc++6-8-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
libasan5-dbg liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg
libquadmath0-dbg gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff isoquery lrzip
libitpp-dev liblapack-doc libbluray-bdj libboost-doc libboost1.62-doc
libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev
libboost-coroutine1.62-dev libboost-date-time1.62-dev
libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-python1.62-dev
libboost-random1.62-dev libboost-regex1.62-dev
libboost-serialization1.62-dev libboost-signals1.62-dev
libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
libboost1.62-tools-dev libmpfrc++-dev libntl-dev cups-common libcurl4-doc
libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev libeigen3-doc libfftw3-doc libgdal-doc libgeotiff-epsg
geotiff-bin gdal-bin libglib2.0-doc libgraphite2-utils krb5-doc krb5-user
libvisual-0.4-plugins gstreamer1.0-tools libhdf4-doc hdf4-tools libhdf5-doc
libhwloc-contrib-plugins libice-doc icu-doc liblcms2-utils libtool-doc
liblzma-doc netcdf-bin netcdf-doc libmyodbc odbc-postgresql tdsodbc
unixodbc-bin ogdi-bin openmpi-doc opus-tools pciutils postgresql-doc-10
proj-bin qt5-image-formats-plugins qtwayland5 qt5-qmltooling-plugins
librsvg2-bin lm-sensors libsm-doc speex sqlite3-doc libstdc++-8-doc
libsuperlu-doc gcj-jdk vtk6-doc vtk6-examples java-virtual-machine
libx11-doc libxcb-doc libxerces-c-doc libxext-doc libxt-doc m4-doc apparmor
less www-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl python-doc python-tk python-attr-doc
python-cryptography-doc python-cryptography-vectors python-enum34-doc
python-future-doc python-numpy python-nacl-doc python-openssl-doc
python-openssl-dbg python-pil-doc python-pil-dbg python-setuptools
python-trie-doc python-twisted-bin-dbg python-gtk2 python-glade2 python-qt3
python-wxgtk3.0 python-txaio-doc mayavi2 python2-doc python2.7-doc
binfmt-support python3-doc python3-tk python3-venv python3.6-venv
python3.6-doc tcl-doc tcl-tclreadline tcl8.6-doc tk-doc tk8.6-doc
Recommended packages:
python-dev curl | wget | lynx libaacs0 libpam-cap libarchive-cpio-perl
proj-bin libgdk-pixbuf2.0-bin xdg-user-dirs gstreamer1.0-plugins-base
javascript-common krb5-locales libcoarrays-dev libpng-tools poppler-data
publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme
geoclue-2.0 libgl1-mesa-glx librsvg2-common va-driver-all | va-driver
vdpau-driver-all | vdpau-driver libwacom-bin libpoclu-dev open-coarrays-bin
xauth libmail-sendmail-perl python-click python-olefile python-pam
python-serial xterm | x-terminal-emulator
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
cython debhelper default-libmysqlclient-dev dh-autoreconf
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core gcc-7-base gdal-data gettext gettext-base gfortran
gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base hdf5-helpers
ibverbs-providers icu-devtools intltool-debian iso-codes libaec-dev libaec0
libarchive-zip-perl libarchive13 libarmadillo-dev libarmadillo9 libarpack2
libarpack2-dev libavahi-client3 libavahi-common-data libavahi-common3
libavcodec-dev libavcodec58 libavformat-dev libavformat58 libavutil-dev
libavutil56 libblas-dev libblas3 libbluray2 libboost-dev libboost1.62-dev
libbrotli1 libbsd0 libcairo2 libcap2-bin libcharls-dev libcharls1
libchromaprint1 libcodec2-0.8.1 libcroco3 libcups2 libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdap-dev libdap25 libdapclient6v5 libdapserver7v5
libdatrie1 libdouble-conversion1 libdrm-amdgpu1 libdrm-dev libdrm-etnaviv1
libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1
libdrm-tegra0 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1
libepsilon-dev libepsilon1 libevdev2 libevent-2.1-6 libevent-core-2.1-6
libevent-pthreads-2.1-6 libexpat1-dev libfftw3-bin libfftw3-dev
libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl
libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev
libfreexl-dev libfreexl1 libfribidi0 libfyba-dev libfyba0 libgbm1
libgdal-dev libgdal20 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
libgeos-3.6.2 libgeos-c1v5 libgeos-dev libgeotiff-dev libgeotiff2
libgfortran-8-dev libgfortran4 libgfortran5 libgif-dev libgif7
libgirepository-1.0-1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev
libgl2ps1.4 libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa
libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0
libglx0 libgme0 libgraphite2-3 libgraphite2-dev libgsm1 libgssapi-krb5-2
libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b
libhdf4-0-alt libhdf4-alt-dev libhdf5-100 libhdf5-cpp-100 libhdf5-dev
libhdf5-mpi-dev libhdf5-openmpi-100 libhdf5-openmpi-dev libhwloc-dev
libhwloc-plugins libhwloc5 libhyphen0 libibverbs-dev libibverbs1 libice-dev
libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libinput-bin
libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc libjs-underscore
libjson-c-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1
libkml-dev libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1
libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblapack-dev
liblapack3 liblcms2-2 libllvm6.0 libltdl-dev libltdl7 liblzma-dev liblzo2-2
libmagic-mgc libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
libmariadbclient18 libminizip-dev libminizip1 libmp3lame0 libmpdec2
libmpg123-0 libmtdev1 libnetcdf-c++4 libnetcdf-cxx-legacy-dev libnetcdf-dev
libnetcdf13 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3
libodbc1 libogdi3.2 libogdi3.2-dev libogg-dev libogg0 libopengl0
libopenjp2-7 libopenjp2-7-dev libopenmpi-dev libopenmpi3 libopenmpt0
libopus0 liborc-0.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpmix2 libpng-dev libpoppler-dev
libpoppler-private-dev libpoppler74 libpopt0 libpq-dev libpq5 libproj-dev
libproj13 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib
libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libqhull-dev libqhull-r7 libqhull7
libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5opengl5
libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5
libqt5sensors5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 librhash0
librsvg2-2 librtmp1 libsensors4 libshine3 libsigsegv2 libsm-dev libsm6
libsnappy1v5 libsodium23 libsoxr0 libspatialite-dev libspatialite7 libspeex1
libsqlite3-dev libssh-gcrypt-4 libssh2-1 libssl1.0.2 libsuperlu-dev
libsuperlu5 libswresample-dev libswresample3 libswscale-dev libswscale5
libsymspg-dev libsymspg1 libsz2 libtcl8.6 libthai-data libthai0
libtheora-dev libtheora0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5
libtimedate-perl libtk8.6 libtool libtwolame0 liburiparser-dev liburiparser1
libuv1 libva-drm2 libva-x11-2 libva2 libvdpau1 libvorbis0a libvorbisenc2
libvorbisfile3 libvoro++1 libvpx5 libvtk6-dev libvtk6-java libvtk6-jni
libvtk6.3 libvtk6.3-qt libwacom-common libwacom2 libwavpack1
libwayland-client0 libwayland-server0 libwebp-dev libwebp6 libwebpdemux2
libwebpmux3 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev
libx11-xcb1 libx264-152 libx265-160 libxau-dev libxau6 libxcb-dri2-0
libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev
libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev
libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0
libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev
libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util0 libxcb-xfixes0
libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev
libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxerces-c-dev
libxerces-c3.2 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev
libxft2 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev
libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1
libxss-dev libxss1 libxt-dev libxt6 libxvidcore4 libxxf86vm-dev libxxf86vm1
libzstd-dev libzvbi-common libzvbi0 m4 man-db mesa-common-dev mime-support
mpi-default-bin mpi-default-dev mysql-common ocl-icd-libopencl1
ocl-icd-opencl-dev odbcinst odbcinst1debian2 opencl-c-headers openmpi-bin
openmpi-common openssh-client pkg-config po-debconf proj-data python
python-asn1crypto python-attr python-autobahn python-automat python-cbor
python-cffi-backend python-concurrent.futures python-configparser
python-constantly python-cryptography python-enum34 python-future
python-hyperlink python-idna python-incremental python-ipaddress python-lz4
python-minimal python-mpi4py python-nacl python-openssl python-pil
python-pkg-resources python-pyasn1 python-pyasn1-modules python-qrcode
python-service-identity python-six python-snappy python-trie python-trollius
python-twisted python-twisted-bin python-twisted-core python-txaio
python-u-msgpack python-ubjson python-vtk6 python-wsaccel
python-zope.interface python2 python2-minimal python2.7 python2.7-minimal
python3 python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal sbuild-build-depends-lammps-dummy shared-mime-info tcl
tcl-dev tcl-vtk6 tcl8.6 tcl8.6-dev tk tk-dev tk8.6 tk8.6-dev ucf
unixodbc-dev uuid-dev voro++-dev vtk6 x11-common x11proto-core-dev
x11proto-damage-dev x11proto-dev x11proto-dri2-dev x11proto-fixes-dev
x11proto-gl-dev x11proto-scrnsaver-dev x11proto-xext-dev
x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libdrm-common
libdrm2 libexpat1 libgcc-8-dev libgcc1 libgomp1 libpcre3 libstdc++-8-dev
libstdc++6 libubsan1 libzstd1
18 upgraded, 525 newly installed, 0 to remove and 53 not upgraded.
Need to get 287 MB/312 MB of archives.
After this operation, 1301 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-OWbyaW/apt_archive ./ sbuild-build-depends-lammps-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-6+rpi1 [30.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-6+rpi1 [187 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-6+rpi1 [36.5 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-6+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-6+rpi1 [8104 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-6+rpi1 [317 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-6+rpi1 [104 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-6+rpi1 [5939 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-6+rpi1 [1562 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-6+rpi1 [595 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-6+rpi1 [5841 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-6+rpi1 [5474 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-6+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libmtdev1 armhf 1.1.5-1 [20.9 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libglvnd0 armhf 1.1.0-1 [54.5 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libdrm-common all 2.4.94-1+rpi1 [13.8 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libdrm2 armhf 2.4.94-1+rpi1 [35.4 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.6-1 [76.8 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libwayland-server0 armhf 1.16.0-1 [26.0 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libgbm1 armhf 18.1.7-1 [60.2 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libglapi-mesa armhf 18.1.7-1 [70.4 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libwayland-client0 armhf 1.16.0-1 [21.2 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13-3 [132 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.6-1 [298 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.6-1 [688 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libx11-xcb1 armhf 2:1.6.6-1 [190 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libxcb-dri2-0 armhf 1.13-3 [99.5 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libxcb-dri3-0 armhf 1.13-3 [99.3 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libxcb-present0 armhf 1.13-3 [98.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libxcb-sync1 armhf 1.13-3 [101 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libxcb-xfixes0 armhf 1.13-3 [102 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:39 http://172.17.0.1/private buster-staging/main armhf libegl-mesa0 armhf 18.1.7-1 [109 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libegl1 armhf 1.1.0-1 [27.6 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libgles2 armhf 1.1.0-1 [20.6 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libpcre3 armhf 2:8.39-11+rpi1 [313 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libcap2-bin armhf 1:2.25-1.2 [26.9 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libgstreamer1.0-0 armhf 1.14.2-2 [2001 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf liborc-0.4-0 armhf 1:0.4.28-2 [115 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf iso-codes all 4.1-1 [2686 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libgstreamer-plugins-base1.0-0 armhf 1.14.2-1 [1849 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libhyphen0 armhf 2.8.8-5 [29.7 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.8-2+rpi1 [860 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libdouble-conversion1 armhf 2.0.1-5 [33.7 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libpcre2-16-0 armhf 10.31-3 [169 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libqt5core5a armhf 5.11.1+dfsg-7+rpi1 [1644 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.0-5 [403 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libevdev2 armhf 1.5.9+dfsg-2 [24.6 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libgudev-1.0-0 armhf 232-2+rpi1 [11.8 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libwacom-common all 0.30-1 [38.3 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libwacom2 armhf 0.30-1 [15.9 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libinput-bin armhf 1.12.0-1 [15.0 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libinput10 armhf 1.12.0-1 [88.6 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libqt5dbus5 armhf 5.11.1+dfsg-7+rpi1 [194 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libqt5network5 armhf 5.11.1+dfsg-7+rpi1 [562 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libxcb-icccm4 armhf 0.4.1-1+b1 [26.3 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13-3 [98.4 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libxcb-util0 armhf 0.3.8-3 [21.5 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libxcb-image0 armhf 0.4.0-1+b2 [23.3 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.9 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libxcb-randr0 armhf 1.13-3 [108 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13-3 [107 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.3 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libxcb-shape0 armhf 1.13-3 [98.6 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libxcb-xinerama0 armhf 1.13-3 [97.9 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libxcb-xkb1 armhf 1.13-3 [119 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf xkb-data all 2.23.1-1 [675 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libxkbcommon0 armhf 0.8.2-1 [110 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libxkbcommon-x11-0 armhf 0.8.2-1 [38.1 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libqt5gui5 armhf 5.11.1+dfsg-7+rpi1 [2144 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libqt5positioning5 armhf 5.11.1+dfsg-4 [157 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.7-4 [122 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.7-4 [51.1 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.7-4 [53.7 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.3 [12.2 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.8-5 [285 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libqt5widgets5 armhf 5.11.1+dfsg-7+rpi1 [1935 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libqt5printsupport5 armhf 5.11.1+dfsg-7+rpi1 [195 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libqt5qml5 armhf 5.11.1-5 [997 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libqt5quick5 armhf 5.11.1-5 [1048 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libqt5sensors5 armhf 5.11.1-3 [95.3 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libqt5webchannel5 armhf 5.11.1-3 [41.8 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libbrotli1 armhf 1.0.5-2 [259 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libwoff1 armhf 1.0.2-1 [36.1 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libxslt1.1 armhf 1.1.32-2 [215 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libqt5webkit5 armhf 5.212.0~alpha2-15+rpi1 [8296 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-4 [394 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-4 [1088 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-4 [1843 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-4 [299 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6-1 [565 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6-1 [1383 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6-1 [1638 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6-1 [234 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libzstd1 armhf 1.3.5+dfsg-1+rpi1 [183 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2o-1 [888 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-7 [117 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20180525-1 [70.6 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [156 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf openssh-client armhf 1:7.8p1-1 [673 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-1.1 [771 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-7 [434 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.12.1-1 [1436 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-5 [266 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.32.0-1 [71.7 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-1 [52.5 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.6-2 [97.2 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.23.0-1 [93.5 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.12.1-1 [2550 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.28.4-1 [1947 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-4 [547 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-7 [1218 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf libmariadbclient18 armhf 1:10.1.35-1 [686 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.35-1 [1528 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.35-1 [28.1 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:159 http://172.17.0.1/private buster-staging/main armhf gdal-data all 2.3.1+dfsg-3 [731 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-6+rpi1 [206 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-6+rpi1 [248 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-6+rpi1 [5813 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.1.0-1+rpi1 [1424 B]
Get:164 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.56.1-1 [77.6 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.56.1-1 [142 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.8.8-2+rpi1 [648 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.8.8-2+rpi1 [655 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4+b2 [36.4 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 20.0-1 [43.2 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf ibverbs-providers armhf 20.0-1 [19.9 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1 [103 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1 [1518 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libarpack2 armhf 3.5.0+real-2+b2 [80.6 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libarmadillo9 armhf 1:9.100.5+dfsg-1 [86.3 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1 [111 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1 [1577 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libarpack2-dev armhf 3.5.0+real-2+b2 [87.0 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4+b2 [1216 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4+b2 [117 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4+b2 [2150 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-3 [18.2 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf libarmadillo-dev armhf 1:9.100.5+dfsg-1 [357 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libva2 armhf 2.2.0-1 [50.1 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf libva-drm2 armhf 2.2.0-1 [15.6 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libva-x11-2 armhf 2.2.0-1 [19.3 kB]
Get:191 http://172.17.0.1/private buster-staging/main armhf libavutil56 armhf 7:4.0.2-1+b2 [231 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libswresample3 armhf 7:4.0.2-1+b2 [87.7 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.12-1 [589 kB]
Get:194 http://172.17.0.1/private buster-staging/main armhf libcodec2-0.8.1 armhf 0.8.1-1 [214 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf libopus0 armhf 1.3~beta+20180518-1 [165 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-6 [225 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-common all 2.36.12-2 [313 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.36.12-2 [155 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-1 [165 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-1 [60.8 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-1 [50.8 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf librsvg2-2 armhf 2.40.20-3 [92.4 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf libshine3 armhf 3.1.1-2 [22.0 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf libtwolame0 armhf 0.3.13-4 [44.9 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf libvorbis0a armhf 1.3.6-1 [82.2 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf libvorbisenc2 armhf 1.3.6-1 [73.4 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf libwavpack1 armhf 5.1.0-4 [72.9 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libx264-152 armhf 2:0.152.2854+gite9a5903-2+rpi1+b1 [773 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf libx265-160 armhf 2.8-4 [515 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf libavcodec58 armhf 7:4.0.2-1+b2 [4268 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf libavutil-dev armhf 7:4.0.2-1+b2 [349 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf libswresample-dev armhf 7:4.0.2-1+b2 [96.7 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf libavcodec-dev armhf 7:4.0.2-1+b2 [4792 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf libbluray2 armhf 1:1.0.2-3 [134 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf libchromaprint1 armhf 1.4.3-2+b1 [35.0 kB]
Get:220 http://172.17.0.1/private buster-staging/main armhf libmpg123-0 armhf 1.25.10-2 [122 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf libvorbisfile3 armhf 1.3.6-1 [23.8 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf libopenmpt0 armhf 0.3.11-1 [502 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf libssh-gcrypt-4 armhf 0.8.1-1 [161 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf libavformat58 armhf 7:4.0.2-1+b2 [900 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf libavformat-dev armhf 7:4.0.2-1+b2 [1137 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-8 [7003 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:228 http://172.17.0.1/private buster-staging/main armhf libcharls-dev armhf 1.1.0+dfsg-2 [21.6 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf libcurl3-gnutls armhf 7.61.0-1 [281 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf libcurl4-gnutls-dev armhf 7.61.0-1 [353 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.8.8-2+rpi1 [641 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.1-2 [1694 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6-1 [79.1 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6-1 [144 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.1-2 [1733 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:239 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:240 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.1-2 [2807 kB]
Get:241 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:242 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.8.8-2+rpi1 [930 kB]
Get:243 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:244 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:245 http://172.17.0.1/private buster-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7 [672 kB]
Get:246 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32.1-0.1 [91.9 kB]
Get:247 http://172.17.0.1/private buster-staging/main armhf libdap-dev armhf 3.19.1-2 [760 kB]
Get:248 http://172.17.0.1/private buster-staging/main armhf libdrm-amdgpu1 armhf 2.4.94-1+rpi1 [25.7 kB]
Get:249 http://172.17.0.1/private buster-staging/main armhf libdrm-radeon1 armhf 2.4.94-1+rpi1 [28.5 kB]
Get:250 http://172.17.0.1/private buster-staging/main armhf libdrm-nouveau2 armhf 2.4.94-1+rpi1 [24.4 kB]
Get:251 http://172.17.0.1/private buster-staging/main armhf libdrm-omap1 armhf 2.4.94-1+rpi1 [16.0 kB]
Get:252 http://172.17.0.1/private buster-staging/main armhf libdrm-freedreno1 armhf 2.4.94-1+rpi1 [25.8 kB]
Get:253 http://172.17.0.1/private buster-staging/main armhf libdrm-exynos1 armhf 2.4.94-1+rpi1 [19.0 kB]
Get:254 http://172.17.0.1/private buster-staging/main armhf libdrm-tegra0 armhf 2.4.94-1+rpi1 [15.4 kB]
Get:255 http://172.17.0.1/private buster-staging/main armhf libdrm-etnaviv1 armhf 2.4.94-1+rpi1 [19.8 kB]
Get:256 http://172.17.0.1/private buster-staging/main armhf libdrm-dev armhf 2.4.94-1+rpi1 [212 kB]
Get:257 http://172.17.0.1/private buster-staging/main armhf libeigen3-dev all 3.3.5-1 [848 kB]
Get:258 http://172.17.0.1/private buster-staging/main armhf libpopt0 armhf 1.16-11 [45.9 kB]
Get:259 http://172.17.0.1/private buster-staging/main armhf libepsilon1 armhf 0.9.2+dfsg-4 [36.4 kB]
Get:260 http://172.17.0.1/private buster-staging/main armhf libepsilon-dev armhf 0.9.2+dfsg-4 [46.0 kB]
Get:261 http://172.17.0.1/private buster-staging/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [117 kB]
Get:262 http://172.17.0.1/private buster-staging/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB]
Get:263 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:264 http://172.17.0.1/private buster-staging/main armhf libfftw3-double3 armhf 3.3.8-2 [429 kB]
Get:265 http://172.17.0.1/private buster-staging/main armhf libfftw3-single3 armhf 3.3.8-2 [633 kB]
Get:266 http://172.17.0.1/private buster-staging/main armhf libfftw3-bin armhf 3.3.8-2 [43.6 kB]
Get:267 http://172.17.0.1/private buster-staging/main armhf libfftw3-dev armhf 3.3.8-2 [1060 kB]
Get:268 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:269 http://172.17.0.1/private buster-staging/main armhf libfreetype6-dev armhf 2.8.1-2 [2594 kB]
Get:270 http://172.17.0.1/private buster-staging/main armhf libfontconfig1-dev armhf 2.13.0-5 [922 kB]
Get:271 http://172.17.0.1/private buster-staging/main armhf libfreexl1 armhf 1.0.5-3 [31.8 kB]
Get:272 http://172.17.0.1/private buster-staging/main armhf libfreexl-dev armhf 1.0.5-3 [30.3 kB]
Get:273 http://172.17.0.1/private buster-staging/main armhf libfyba0 armhf 4.1.1-6 [97.8 kB]
Get:274 http://172.17.0.1/private buster-staging/main armhf libfyba-dev armhf 4.1.1-6 [161 kB]
Get:275 http://172.17.0.1/private buster-staging/main armhf proj-data all 5.1.0-2 [6992 kB]
Get:276 http://172.17.0.1/private buster-staging/main armhf libproj13 armhf 5.1.0-2 [182 kB]
Get:277 http://172.17.0.1/private buster-staging/main armhf libgeotiff2 armhf 1.4.2-4 [66.2 kB]
Get:278 http://172.17.0.1/private buster-staging/main armhf libgif7 armhf 5.1.4-3 [41.0 kB]
Get:279 http://172.17.0.1/private buster-staging/main armhf libhdf4-0-alt armhf 4.2.13-4 [234 kB]
Get:280 http://172.17.0.1/private buster-staging/main armhf liburiparser1 armhf 0.8.6-1 [36.0 kB]
Get:281 http://172.17.0.1/private buster-staging/main armhf libkmlbase1 armhf 1.3.0-7 [42.1 kB]
Get:282 http://172.17.0.1/private buster-staging/main armhf libkmldom1 armhf 1.3.0-7 [144 kB]
Get:283 http://172.17.0.1/private buster-staging/main armhf libkmlengine1 armhf 1.3.0-7 [67.4 kB]
Get:284 http://172.17.0.1/private buster-staging/main armhf libkmlconvenience1 armhf 1.3.0-7 [44.4 kB]
Get:285 http://172.17.0.1/private buster-staging/main armhf libkmlregionator1 armhf 1.3.0-7 [22.2 kB]
Get:286 http://172.17.0.1/private buster-staging/main armhf libkmlxsd1 armhf 1.3.0-7 [28.7 kB]
Get:287 http://172.17.0.1/private buster-staging/main armhf libnetcdf13 armhf 1:4.6.1-3 [344 kB]
Get:288 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2.1 [386 kB]
Get:289 http://172.17.0.1/private buster-staging/main armhf libodbc1 armhf 2.3.6-0.1 [186 kB]
Get:290 http://172.17.0.1/private buster-staging/main armhf libogdi3.2 armhf 3.2.1+ds-4 [194 kB]
Get:291 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:292 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.20-1 [89.6 kB]
Get:293 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.39-1 [937 kB]
Get:294 http://172.17.0.1/private buster-staging/main armhf libpoppler74 armhf 0.63.0-2 [1225 kB]
Get:295 http://172.17.0.1/private buster-staging/main armhf libpq5 armhf 10.5-1 [149 kB]
Get:296 http://172.17.0.1/private buster-staging/main armhf libxerces-c3.2 armhf 3.2.1+debian-2+b2 [710 kB]
Get:297 http://172.17.0.1/private buster-staging/main armhf odbcinst armhf 2.3.6-0.1 [47.6 kB]
Get:298 http://172.17.0.1/private buster-staging/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [70.8 kB]
Get:299 http://172.17.0.1/private buster-staging/main armhf libgdal20 armhf 2.3.1+dfsg-3 [4860 kB]
Get:300 http://172.17.0.1/private buster-staging/main armhf libgeos-dev armhf 3.6.2-1 [282 kB]
Get:301 http://172.17.0.1/private buster-staging/main armhf libtiffxx5 armhf 4.0.9-6 [100 kB]
Get:302 http://172.17.0.1/private buster-staging/main armhf libtiff5-dev armhf 4.0.9-6 [337 kB]
Get:303 http://172.17.0.1/private buster-staging/main armhf libtiff-dev armhf 4.0.9-6 [96.4 kB]
Get:304 http://172.17.0.1/private buster-staging/main armhf libgeotiff-dev armhf 1.4.2-4 [93.4 kB]
Get:305 http://172.17.0.1/private buster-staging/main armhf libgif-dev armhf 5.1.4-3 [43.4 kB]
Get:306 http://172.17.0.1/private buster-staging/main armhf libnetcdf-dev armhf 1:4.6.1-3 [80.6 kB]
Get:307 http://172.17.0.1/private buster-staging/main armhf libhdf4-alt-dev armhf 4.2.13-4 [310 kB]
Get:308 http://172.17.0.1/private buster-staging/main armhf libjson-c-dev armhf 0.12.1-1.3 [34.6 kB]
Get:309 http://172.17.0.1/private buster-staging/main armhf libminizip-dev armhf 1.1-8 [25.6 kB]
Get:310 http://172.17.0.1/private buster-staging/main armhf liburiparser-dev armhf 0.8.6-1 [18.3 kB]
Get:311 http://172.17.0.1/private buster-staging/main armhf libkml-dev armhf 1.3.0-7 [939 kB]
Get:312 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2.1 [158 kB]
Get:313 http://172.17.0.1/private buster-staging/main armhf libproj-dev armhf 5.1.0-2 [226 kB]
Get:314 http://172.17.0.1/private buster-staging/main armhf libogdi3.2-dev armhf 3.2.1+ds-4 [38.2 kB]
Get:315 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7-dev armhf 2.3.0-1 [43.7 kB]
Get:316 http://172.17.0.1/private buster-staging/main armhf libpoppler-dev armhf 0.63.0-2 [22.5 kB]
Get:317 http://172.17.0.1/private buster-staging/main armhf libpoppler-private-dev armhf 0.63.0-2 [187 kB]
Get:318 http://172.17.0.1/private buster-staging/main armhf libpq-dev armhf 10.5-1 [148 kB]
Get:319 http://172.17.0.1/private buster-staging/main armhf libqhull-r7 armhf 2015.2-4 [171 kB]
Get:320 http://172.17.0.1/private buster-staging/main armhf libqhull-dev armhf 2015.2-4 [346 kB]
Get:321 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.24.0-1 [655 kB]
Get:322 http://172.17.0.1/private buster-staging/main armhf libspatialite-dev armhf 4.3.0a-5+b2 [1460 kB]
Get:323 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:324 http://172.17.0.1/private buster-staging/main armhf libwebp-dev armhf 0.6.1-2 [304 kB]
Get:325 http://172.17.0.1/private buster-staging/main armhf libxerces-c-dev armhf 3.2.1+debian-2+b2 [1486 kB]
Get:326 http://172.17.0.1/private buster-staging/main armhf libzstd-dev armhf 1.3.5+dfsg-1+rpi1 [226 kB]
Get:327 http://172.17.0.1/private buster-staging/main armhf unixodbc-dev armhf 2.3.6-0.1 [232 kB]
Get:328 http://172.17.0.1/private buster-staging/main armhf libgdal-dev armhf 2.3.1+dfsg-3 [6270 kB]
Get:329 http://172.17.0.1/private buster-staging/main armhf libxcb-glx0 armhf 1.13-3 [113 kB]
Get:330 http://172.17.0.1/private buster-staging/main armhf libllvm6.0 armhf 1:6.0.1-6+rpi1 [12.5 MB]
Get:331 http://172.17.0.1/private buster-staging/main armhf libsensors4 armhf 1:3.4.0-4+b1 [50.4 kB]
Get:332 http://172.17.0.1/private buster-staging/main armhf libgl1-mesa-dri armhf 18.1.7-1 [4482 kB]
Get:333 http://172.17.0.1/private buster-staging/main armhf libglx-mesa0 armhf 18.1.7-1 [158 kB]
Get:334 http://172.17.0.1/private buster-staging/main armhf libglx0 armhf 1.1.0-1 [24.6 kB]
Get:335 http://172.17.0.1/private buster-staging/main armhf libgl1 armhf 1.1.0-1 [107 kB]
Get:336 http://172.17.0.1/private buster-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:337 http://172.17.0.1/private buster-staging/main armhf x11proto-dev all 2018.4-4 [251 kB]
Get:338 http://172.17.0.1/private buster-staging/main armhf x11proto-core-dev all 2018.4-4 [3128 B]
Get:339 http://172.17.0.1/private buster-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:340 http://172.17.0.1/private buster-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:341 http://172.17.0.1/private buster-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:342 http://172.17.0.1/private buster-staging/main armhf libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:343 http://172.17.0.1/private buster-staging/main armhf libxcb1-dev armhf 1.13-3 [168 kB]
Get:344 http://172.17.0.1/private buster-staging/main armhf libx11-dev armhf 2:1.6.6-1 [760 kB]
Get:345 http://172.17.0.1/private buster-staging/main armhf mesa-common-dev armhf 18.1.7-1 [585 kB]
Get:346 http://172.17.0.1/private buster-staging/main armhf libglvnd-core-dev armhf 1.1.0-1 [13.2 kB]
Get:347 http://172.17.0.1/private buster-staging/main armhf libgles1 armhf 1.1.0-1 [13.8 kB]
Get:348 http://172.17.0.1/private buster-staging/main armhf libopengl0 armhf 1.1.0-1 [40.3 kB]
Get:349 http://172.17.0.1/private buster-staging/main armhf libglvnd-dev armhf 1.1.0-1 [5132 B]
Get:350 http://172.17.0.1/private buster-staging/main armhf libx11-xcb-dev armhf 2:1.6.6-1 [192 kB]
Get:351 http://172.17.0.1/private buster-staging/main armhf libxcb-dri3-dev armhf 1.13-3 [100 kB]
Get:352 http://172.17.0.1/private buster-staging/main armhf libxcb-render0-dev armhf 1.13-3 [110 kB]
Get:353 http://172.17.0.1/private buster-staging/main armhf libxcb-randr0-dev armhf 1.13-3 [113 kB]
Get:354 http://172.17.0.1/private buster-staging/main armhf libxcb-shape0-dev armhf 1.13-3 [99.9 kB]
Get:355 http://172.17.0.1/private buster-staging/main armhf libxcb-xfixes0-dev armhf 1.13-3 [104 kB]
Get:356 http://172.17.0.1/private buster-staging/main armhf libxcb-sync-dev armhf 1.13-3 [103 kB]
Get:357 http://172.17.0.1/private buster-staging/main armhf libxcb-present-dev armhf 1.13-3 [99.8 kB]
Get:358 http://172.17.0.1/private buster-staging/main armhf libxshmfence-dev armhf 1.3-1 [8224 B]
Get:359 http://172.17.0.1/private buster-staging/main armhf libxcb-dri2-0-dev armhf 1.13-3 [101 kB]
Get:360 http://172.17.0.1/private buster-staging/main armhf libxcb-glx0-dev armhf 1.13-3 [119 kB]
Get:361 http://172.17.0.1/private buster-staging/main armhf x11proto-fixes-dev all 1:2018.4-4 [3140 B]
Get:362 http://172.17.0.1/private buster-staging/main armhf libxfixes-dev armhf 1:5.0.3-1 [22.7 kB]
Get:363 http://172.17.0.1/private buster-staging/main armhf x11proto-damage-dev all 1:2018.4-4 [3140 B]
Get:364 http://172.17.0.1/private buster-staging/main armhf libxdamage-dev armhf 1:1.1.4-3 [13.9 kB]
Get:365 http://172.17.0.1/private buster-staging/main armhf x11proto-xext-dev all 2018.4-4 [3128 B]
Get:366 http://172.17.0.1/private buster-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:367 http://172.17.0.1/private buster-staging/main armhf x11proto-xf86vidmode-dev all 2018.4-4 [3140 B]
Get:368 http://172.17.0.1/private buster-staging/main armhf libxxf86vm-dev armhf 1:1.1.4-1+b2 [24.9 kB]
Get:369 http://172.17.0.1/private buster-staging/main armhf x11proto-dri2-dev all 2018.4-4 [3132 B]
Get:370 http://172.17.0.1/private buster-staging/main armhf x11proto-gl-dev all 2018.4-4 [3124 B]
Get:371 http://172.17.0.1/private buster-staging/main armhf libgl1-mesa-dev armhf 18.1.7-1 [44.3 kB]
Get:372 http://172.17.0.1/private buster-staging/main armhf libgl2ps1.4 armhf 1.4.0+dfsg1-2 [34.2 kB]
Get:373 http://172.17.0.1/private buster-staging/main armhf libgl2ps-dev armhf 1.4.0+dfsg1-2 [14.8 kB]
Get:374 http://172.17.0.1/private buster-staging/main armhf libglu1-mesa-dev armhf 9.0.0-2.1 [169 kB]
Get:375 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.10-3+rpi1 [86.2 kB]
Get:376 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.10-3+rpi1 [141 kB]
Get:377 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:378 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.10-3+rpi1 [15.6 kB]
Get:379 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 20.0-1 [108 kB]
Get:380 http://172.17.0.1/private buster-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:381 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:382 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.7.9-1 [92.3 kB]
Get:383 http://172.17.0.1/private buster-staging/main armhf libnetcdf-c++4 armhf 4.2-11 [28.3 kB]
Get:384 http://172.17.0.1/private buster-staging/main armhf libnetcdf-cxx-legacy-dev armhf 4.2-11 [51.0 kB]
Get:385 http://172.17.0.1/private buster-staging/main armhf libogg-dev armhf 1.3.2-1 [195 kB]
Get:386 http://172.17.0.1/private buster-staging/main armhf libpmix2 armhf 3.0.1-2 [345 kB]
Get:387 http://172.17.0.1/private buster-staging/main armhf libopenmpi3 armhf 3.1.2-1+rpi1 [2071 kB]
Get:388 http://172.17.0.1/private buster-staging/main armhf openmpi-common all 3.1.2-1+rpi1 [162 kB]
Get:389 http://172.17.0.1/private buster-staging/main armhf openmpi-bin armhf 3.1.2-1+rpi1 [194 kB]
Get:390 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 3.1.2-1+rpi1 [953 kB]
Get:391 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-4 [871 kB]
Get:392 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-4 [30.8 MB]
Get:393 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:394 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:395 http://172.17.0.1/private buster-staging/main armhf libqt5opengl5 armhf 5.11.1+dfsg-7+rpi1 [137 kB]
Get:396 http://172.17.0.1/private buster-staging/main armhf libsm-dev armhf 2:1.2.2-1+b3 [33.4 kB]
Get:397 http://172.17.0.1/private buster-staging/main armhf libsodium23 armhf 1.0.16-2 [139 kB]
Get:398 http://172.17.0.1/private buster-staging/main armhf libswscale5 armhf 7:4.0.2-1+b2 [161 kB]
Get:399 http://172.17.0.1/private buster-staging/main armhf libswscale-dev armhf 7:4.0.2-1+b2 [174 kB]
Get:400 http://172.17.0.1/private buster-staging/main armhf libsymspg1 armhf 1.10.4-3 [70.2 kB]
Get:401 http://172.17.0.1/private buster-staging/main armhf libsymspg-dev armhf 1.10.4-3 [77.7 kB]
Get:402 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:403 http://172.17.0.1/private buster-staging/main armhf libtheora-dev armhf 1.1.1+dfsg.1-14 [172 kB]
Get:404 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:405 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:406 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:407 http://172.17.0.1/private buster-staging/main armhf libvoro++1 armhf 0.4.6+dfsg1-3 [91.4 kB]
Get:408 http://172.17.0.1/private buster-staging/main armhf libhdf5-openmpi-100 armhf 1.10.0-patch1+docs-4+b2 [1244 kB]
Get:409 http://172.17.0.1/private buster-staging/main armhf libhdf5-openmpi-dev armhf 1.10.0-patch1+docs-4+b2 [2095 kB]
Get:410 http://172.17.0.1/private buster-staging/main armhf mpi-default-dev armhf 1.13 [5476 B]
Get:411 http://172.17.0.1/private buster-staging/main armhf libhdf5-mpi-dev armhf 1.10.0-patch1+docs-4+b2 [28.2 kB]
Get:412 http://172.17.0.1/private buster-staging/main armhf libjsoncpp-dev armhf 1.7.4-3 [78.6 kB]
Get:413 http://172.17.0.1/private buster-staging/main armhf libvtk6.3 armhf 6.3.0+dfsg2-2+b3 [27.1 MB]
Get:414 http://172.17.0.1/private buster-staging/main armhf libvtk6.3-qt armhf 6.3.0+dfsg2-2+b3 [213 kB]
Get:415 http://172.17.0.1/private buster-staging/main armhf libvtk6-jni armhf 6.3.0+dfsg2-2+b3 [3729 kB]
Get:416 http://172.17.0.1/private buster-staging/main armhf libvtk6-java armhf 6.3.0+dfsg2-2+b3 [3297 kB]
Get:417 http://172.17.0.1/private buster-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:418 http://172.17.0.1/private buster-staging/main armhf libxft-dev armhf 2.3.2-2 [60.3 kB]
Get:419 http://172.17.0.1/private buster-staging/main armhf x11proto-scrnsaver-dev all 2018.4-4 [3136 B]
Get:420 http://172.17.0.1/private buster-staging/main armhf libxss-dev armhf 1:1.2.3-1 [23.0 kB]
Get:421 http://172.17.0.1/private buster-staging/main armhf libxt-dev armhf 1:1.1.5-1 [390 kB]
Get:422 http://172.17.0.1/private buster-staging/main armhf python-cbor armhf 1.0.0-1 [19.5 kB]
Get:423 http://172.17.0.1/private buster-staging/main armhf python-concurrent.futures all 3.2.0-1 [36.2 kB]
Get:424 http://172.17.0.1/private buster-staging/main armhf python-configparser all 3.5.0b2-1 [59.2 kB]
Get:425 http://172.17.0.1/private buster-staging/main armhf python-future all 0.15.2-5 [347 kB]
Get:426 http://172.17.0.1/private buster-staging/main armhf python-lz4 armhf 1.1.0+dfsg-1 [23.5 kB]
Get:427 http://172.17.0.1/private buster-staging/main armhf python-cffi-backend armhf 1.11.5-3 [67.4 kB]
Get:428 http://172.17.0.1/private buster-staging/main armhf python-six all 1.11.0-2 [15.1 kB]
Get:429 http://172.17.0.1/private buster-staging/main armhf python-nacl armhf 1.2.1-3 [32.9 kB]
Get:430 http://172.17.0.1/private buster-staging/main armhf python-asn1crypto all 0.24.0-1 [78.1 kB]
Get:431 http://172.17.0.1/private buster-staging/main armhf python-enum34 all 1.1.6-2 [35.3 kB]
Get:432 http://172.17.0.1/private buster-staging/main armhf python-idna all 2.6-1 [34.1 kB]
Get:433 http://172.17.0.1/private buster-staging/main armhf python-ipaddress all 1.0.17-1 [18.1 kB]
Get:434 http://172.17.0.1/private buster-staging/main armhf python-cryptography armhf 2.3-1 [180 kB]
Get:435 http://172.17.0.1/private buster-staging/main armhf python-openssl all 18.0.0-1 [51.5 kB]
Get:436 http://172.17.0.1/private buster-staging/main armhf python-pil armhf 5.2.0-2 [356 kB]
Get:437 http://172.17.0.1/private buster-staging/main armhf python-qrcode all 6.0-1 [30.4 kB]
Get:438 http://172.17.0.1/private buster-staging/main armhf python-attr all 17.4.0-2 [23.8 kB]
Get:439 http://172.17.0.1/private buster-staging/main armhf python-pyasn1 all 0.4.2-3 [57.6 kB]
Get:440 http://172.17.0.1/private buster-staging/main armhf python-pyasn1-modules all 0.2.1-0.2 [34.4 kB]
Get:441 http://172.17.0.1/private buster-staging/main armhf python-service-identity all 16.0.0-2 [9350 B]
Get:442 http://172.17.0.1/private buster-staging/main armhf python-snappy armhf 0.5.3-1 [16.1 kB]
Get:443 http://172.17.0.1/private buster-staging/main armhf python-trie all 0.2+ds-1 [7034 B]
Get:444 http://172.17.0.1/private buster-staging/main armhf python-trollius all 2.1~b1-5 [95.0 kB]
Get:445 http://172.17.0.1/private buster-staging/main armhf python-twisted-bin armhf 18.7.0-2 [21.6 kB]
Get:446 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 40.2.0-1 [172 kB]
Get:447 http://172.17.0.1/private buster-staging/main armhf python-zope.interface armhf 4.3.2-1+b1 [88.4 kB]
Get:448 http://172.17.0.1/private buster-staging/main armhf python-automat all 0.6.0-1 [25.0 kB]
Get:449 http://172.17.0.1/private buster-staging/main armhf python-constantly all 15.1.0-1 [7902 B]
Get:450 http://172.17.0.1/private buster-staging/main armhf python-hyperlink all 17.3.1-2 [29.2 kB]
Get:451 http://172.17.0.1/private buster-staging/main armhf python-incremental all 16.10.1-3 [14.4 kB]
Get:452 http://172.17.0.1/private buster-staging/main armhf python-twisted-core all 18.7.0-2 [1994 kB]
Get:453 http://172.17.0.1/private buster-staging/main armhf python-twisted all 18.7.0-2 [13.1 kB]
Get:454 http://172.17.0.1/private buster-staging/main armhf python-txaio all 2.8.1-1 [18.2 kB]
Get:455 http://172.17.0.1/private buster-staging/main armhf python-u-msgpack all 2.1-1 [7226 B]
Get:456 http://172.17.0.1/private buster-staging/main armhf python-ubjson armhf 0.12.0-1 [29.9 kB]
Get:457 http://172.17.0.1/private buster-staging/main armhf python-wsaccel armhf 0.6.2-1 [16.9 kB]
Get:458 http://172.17.0.1/private buster-staging/main armhf python-autobahn all 17.10.1+dfsg1-3 [163 kB]
Get:459 http://172.17.0.1/private buster-staging/main armhf mpi-default-bin armhf 1.13 [4672 B]
Get:460 http://172.17.0.1/private buster-staging/main armhf python-mpi4py armhf 2.0.0-3+b2 [358 kB]
Get:461 http://172.17.0.1/private buster-staging/main armhf python-vtk6 armhf 6.3.0+dfsg2-2+b3 [240 kB]
Get:462 http://172.17.0.1/private buster-staging/main armhf tcl8.6 armhf 8.6.8+dfsg-4 [123 kB]
Get:463 http://172.17.0.1/private buster-staging/main armhf tcl8.6-dev armhf 8.6.8+dfsg-4 [892 kB]
Get:464 http://172.17.0.1/private buster-staging/main armhf tcl armhf 8.6.0+9 [5502 B]
Get:465 http://172.17.0.1/private buster-staging/main armhf tcl-dev armhf 8.6.0+9 [7986 B]
Get:466 http://172.17.0.1/private buster-staging/main armhf tcl-vtk6 armhf 6.3.0+dfsg2-2+b3 [127 kB]
Get:467 http://172.17.0.1/private buster-staging/main armhf tk8.6 armhf 8.6.8-4 [71.8 kB]
Get:468 http://172.17.0.1/private buster-staging/main armhf tk8.6-dev armhf 8.6.8-4 [667 kB]
Get:469 http://172.17.0.1/private buster-staging/main armhf tk armhf 8.6.0+9 [5546 B]
Get:470 http://172.17.0.1/private buster-staging/main armhf tk-dev armhf 8.6.0+9 [5324 B]
Get:471 http://172.17.0.1/private buster-staging/main armhf vtk6 armhf 6.3.0+dfsg2-2+b3 [147 kB]
Get:472 http://172.17.0.1/private buster-staging/main armhf libvtk6-dev armhf 6.3.0+dfsg2-2+b3 [2149 kB]
Get:473 http://172.17.0.1/private buster-staging/main armhf opencl-c-headers all 2.2~2018.05.14-gde26592-1 [31.5 kB]
Get:474 http://172.17.0.1/private buster-staging/main armhf ocl-icd-opencl-dev armhf 2.2.12-1 [10.3 kB]
Get:475 http://172.17.0.1/private buster-staging/main armhf voro++-dev armhf 0.4.6+dfsg1-3 [126 kB]
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Setting up uuid-dev:armhf (2.32.1-0.1) ...
Setting up libjs-sphinxdoc (1.7.9-1) ...
Setting up libgdk-pixbuf2.0-common (2.36.12-2) ...
Setting up libopenjp2-7-dev (2.3.0-1) ...
Setting up libdatrie1:armhf (0.2.12-1) ...
Setting up libtiff5:armhf (4.0.9-6) ...
Setting up gettext-base (0.19.8.1-7) ...
Setting up libshine3:armhf (3.1.1-2) ...
Setting up cmake-data (3.12.1-1) ...
Setting up libgif7:armhf (5.1.4-3) ...
Setting up libva2:armhf (2.2.0-1) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up libmariadbclient18:armhf (1:10.1.35-1) ...
Setting up libglapi-mesa:armhf (18.1.7-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up libepsilon1:armhf (0.9.2+dfsg-4) ...
Setting up libspeex1:armhf (1.2~rc1.2-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libminizip-dev:armhf (1.1-8) ...
Setting up libfftw3-double3:armhf (3.3.8-2) ...
Setting up libxvidcore4:armhf (2:1.3.5-1) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up libnspr4:armhf (2:4.20-1) ...
Setting up ucf (3.0038) ...
Setting up libgirepository-1.0-1:armhf (1.56.1-1) ...
Setting up libfreexl1:armhf (1.0.5-3) ...
Setting up x11proto-dev (2018.4-4) ...
Setting up libopus0:armhf (1.3~beta+20180518-1) ...
Setting up libfreetype6:armhf (2.8.1-2) ...
Setting up libmagic-mgc (1:5.34-2) ...
Setting up libfyba0:armhf (4.1.1-6) ...
Setting up libmagic1:armhf (1:5.34-2) ...
Setting up libdrm-common (2.4.94-1+rpi1) ...
Setting up libgraphite2-3:armhf (1.3.12-1) ...
Setting up librhash0:armhf (1.3.6-2) ...
Setting up libjbig-dev:armhf (2.1-3.1+b2) ...
Setting up libx265-160:armhf (2.8-4) ...
Setting up libsymspg1 (1.10.4-3) ...
Setting up gcc-7-base:armhf (7.3.0-19) ...
Setting up libogg0:armhf (1.3.2-1) ...
Setting up gdal-data (2.3.1+dfsg-3) ...
Setting up libvoro++1 (0.4.6+dfsg1-3) ...
Setting up libssl1.0.2:armhf (1.0.2o-1) ...
Setting up libsodium23:armhf (1.0.16-2) ...
Setting up x11proto-damage-dev (1:2018.4-4) ...
Setting up pkg-config (0.29-4) ...
Setting up libhyphen0:armhf (2.8.8-5) ...
Setting up libgeos-c1v5:armhf (3.6.2-1) ...
Setting up libx11-xcb1:armhf (2:1.6.6-1) ...
Setting up voro++-dev (0.4.6+dfsg1-3) ...
Setting up libpixman-1-0:armhf (0.34.0-2) ...
Setting up xtrans-dev (1.3.5-1) ...
Setting up libmp3lame0:armhf (3.100-2) ...
Setting up gir1.2-glib-2.0:armhf (1.56.1-1) ...
Setting up x11proto-xext-dev (2018.4-4) ...
Setting up libssh2-1:armhf (1.8.0-2) ...
Setting up libglib2.0-data (2.56.1-2) ...
Setting up libevent-pthreads-2.1-6:armhf (2.1.8-stable-4) ...
Setting up openmpi-common (3.1.2-1+rpi1) ...
Processing triggers for libc-bin (2.27-5+rpi1) ...
Setting up libcodec2-0.8.1:armhf (0.8.1-1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libsnappy1v5:armhf (1.1.7-1) ...
Setting up libcharls-dev:armhf (1.1.0+dfsg-2) ...
Setting up libzstd-dev:armhf (1.3.5+dfsg-1+rpi1) ...
Setting up x11proto-gl-dev (2018.4-4) ...
Processing triggers for systemd (239-7) ...
Setting up libltdl7:armhf (2.4.6-2.1) ...
Setting up libmtdev1:armhf (1.1.5-1) ...
Setting up libjson-c-dev:armhf (0.12.1-1.3) ...
Setting up libtiffxx5:armhf (4.0.9-6) ...
Setting up libzvbi-common (0.2.35-13) ...
Setting up libfribidi0:armhf (1.0.5-3) ...
Setting up libexpat1-dev:armhf (2.2.6-1) ...
Setting up libpciaccess0:armhf (0.14-1) ...
Setting up libfftw3-single3:armhf (3.3.8-2) ...
Setting up libsensors4:armhf (1:3.4.0-4+b1) ...
Setting up libgles2:armhf (1.1.0-1) ...
Setting up x11proto-scrnsaver-dev (2018.4-4) ...
Setting up libxkbcommon0:armhf (0.8.2-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-11+rpi1) ...
Setting up libpcre32-3:armhf (2:8.39-11+rpi1) ...
Setting up libgudev-1.0-0:armhf (232-2+rpi1) ...
Setting up libvpx5:armhf (1.7.0-3) ...
Setting up liborc-0.4-0:armhf (1:0.4.28-2) ...
Setting up libpcre16-3:armhf (2:8.39-11+rpi1) ...
Setting up libgme0:armhf (0.6.2-1) ...
Setting up libtcl8.6:armhf (8.6.8+dfsg-4) ...
Setting up libthai-data (0.1.28-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up liblzma-dev:armhf (5.2.2-1.3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up ocl-icd-libopencl1:armhf (2.2.12-1) ...
Setting up libhdf4-0-alt (4.2.13-4) ...
Setting up libzvbi0:armhf (0.2.35-13) ...
Setting up libkeyutils1:armhf (1.5.9-9.3) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up libvorbis0a:armhf (1.3.6-1) ...
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libmpg123-0:armhf (1.25.10-2) ...
Setting up libglib2.0-bin (2.56.1-2) ...
Setting up libfyba-dev:armhf (4.1.1-6) ...
Setting up libogg-dev:armhf (1.3.2-1) ...
Setting up libasan5:armhf (8.2.0-6+rpi1) ...
Setting up libgfortran5:armhf (8.2.0-6+rpi1) ...
Setting up libglvnd-core-dev:armhf (1.1.0-1) ...
Setting up libgraphite2-dev:armhf (1.3.12-1) ...
Setting up libpcre2-16-0:armhf (10.31-3) ...
Setting up hdf5-helpers (1.10.0-patch1+docs-4+b2) ...
Setting up libqhull-r7:armhf (2015.2-4) ...
Setting up libgsm1:armhf (1.0.13-4) ...
Setting up libx11-data (2:1.6.6-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.15-4) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-7) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up liblzo2-2:armhf (2.10-0.1) ...
Setting up liburiparser1:armhf (0.8.6-1) ...
Setting up libavahi-common-data:armhf (0.7-4) ...
Setting up libsz2:armhf (1.0.2-1) ...
Setting up proj-data (5.1.0-2) ...
Setting up libwayland-server0:armhf (1.16.0-1) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.042-1) ...
Setting up libubsan1:armhf (8.2.0-6+rpi1) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up libfreexl-dev:armhf (1.0.5-3) ...
Setting up libvorbisfile3:armhf (1.3.6-1) ...
Setting up libjsoncpp-dev:armhf (1.7.4-3) ...
Setting up libedit2:armhf (3.1-20180525-1) ...
Setting up x11proto-dri2-dev (2018.4-4) ...
Setting up libpython3.6-stdlib:armhf (3.6.6-1) ...
Setting up libsymspg-dev (1.10.4-3) ...
Setting up libmariadbclient-dev (1:10.1.35-1) ...
Setting up libfftw3-bin (3.3.8-2) ...
Setting up libpcre3-dev:armhf (2:8.39-11+rpi1) ...
Setting up fontconfig-config (2.13.0-5) ...
Installing new version of config file /etc/fonts/fonts.conf ...
Setting up python3.6 (3.6.6-1) ...
Setting up libodbc1:armhf (2.3.6-0.1) ...
Setting up libgstreamer1.0-0:armhf (1.14.2-2) ...
Setcap worked! gst-ptp-helper is not suid!
Setting up x11proto-core-dev (2018.4-4) ...
Setting up libwacom2:armhf (0.30-1) ...
Setting up libltdl-dev:armhf (2.4.6-2.1) ...
Setting up libgfortran4:armhf (7.3.0-19) ...
Setting up libxshmfence-dev:armhf (1.3-1) ...
Setting up libllvm6.0:armhf (1:6.0.1-6+rpi1) ...
Setting up libopenmpt0:armhf (0.3.11-1) ...
Setting up libeigen3-dev (3.3.5-1) ...
Setting up libmariadbclient-dev-compat:armhf (1:10.1.35-1) ...
Setting up libgif-dev (5.1.4-3) ...
Setting up libepsilon-dev:armhf (0.9.2+dfsg-4) ...
Setting up ocl-icd-opencl-dev:armhf (2.2.12-1) ...
Setting up x11proto-fixes-dev (1:2018.4-4) ...
Setting up libtiff5-dev:armhf (4.0.9-6) ...
Setting up libaec-dev:armhf (1.0.2-1) ...
Setting up python2.7 (2.7.15-4) ...
Setting up libnss3:armhf (2:3.39-1) ...
Setting up libproj13:armhf (5.1.0-2) ...
Setting up libgeos-dev (3.6.2-1) ...
Setting up libharfbuzz0b:armhf (1.8.8-2+rpi1) ...
Setting up x11proto-xf86vidmode-dev (2018.4-4) ...
Setting up libxau-dev:armhf (1:1.0.8-1+b2) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.28-1) ...
Setting up file (1:5.34-2) ...
Setting up libinput-bin (1.12.0-1) ...
Setting up libhwloc5:armhf (1.11.10-3+rpi1) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up libkmlbase1:armhf (1.3.0-7) ...
Setting up libqhull-dev:armhf (2015.2-4) ...
Setting up libdrm2:armhf (2.4.94-1+rpi1) ...
Setting up libogdi3.2 (3.2.1+ds-4) ...
Setting up libkmlxsd1:armhf (1.3.0-7) ...
Setting up libblas3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libva-drm2:armhf (2.2.0-1) ...
Setting up tcl8.6 (8.6.8+dfsg-4) ...
Setting up libdrm-etnaviv1:armhf (2.4.94-1+rpi1) ...
Setting up libpython2.7:armhf (2.7.15-4) ...
Setting up libgeotiff2:armhf (1.4.2-4) ...
Setting up libfftw3-dev:armhf (3.3.8-2) ...
Setting up automake (1:1.16.1-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up man-db (2.8.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2-stdlib:armhf (2.7.15-3) ...
Setting up liburiparser-dev (0.8.6-1) ...
Setting up libgcc-8-dev:armhf (8.2.0-6+rpi1) ...
Setting up libpython2.7-dev:armhf (2.7.15-4) ...
Setting up libkmldom1:armhf (1.3.0-7) ...
Setting up libavahi-common3:armhf (0.7-4) ...
Setting up libdrm-radeon1:armhf (2.4.94-1+rpi1) ...
Setting up default-libmysqlclient-dev:armhf (1.0.4) ...
Setting up libpng-dev:armhf (1.6.34-2+rpi1) ...
Setting up libvorbisenc2:armhf (1.3.6-1) ...
Setting up libdrm-nouveau2:armhf (2.4.94-1+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-6+rpi1) ...
Setting up libxcb1:armhf (1.13-3) ...
Setting up libharfbuzz-gobject0:armhf (1.8.8-2+rpi1) ...
Setting up tcl8.6-dev:armhf (8.6.8+dfsg-4) ...
Setting up libxcb-xkb1:armhf (1.13-3) ...
Setting up libtool (2.4.6-4) ...
Setting up libxcb-xinerama0:armhf (1.13-3) ...
Setting up libpython3-stdlib:armhf (3.6.5-3) ...
Setting up libibverbs1:armhf (20.0-1) ...
Setting up libxcb-present0:armhf (1.13-3) ...
Setting up libgstreamer-plugins-base1.0-0:armhf (1.14.2-1) ...
Setting up libtiff-dev (4.0.9-6) ...
Setting up libfontconfig1:armhf (2.13.0-5) ...
Setting up libstdc++-8-dev:armhf (8.2.0-6+rpi1) ...
Setting up libxcb-dri2-0:armhf (1.13-3) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libgeotiff-dev:armhf (1.4.2-4) ...
Setting up libproj-dev:armhf (5.1.0-2) ...
Setting up libxcb-dri3-0:armhf (1.13-3) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libxcb-glx0:armhf (1.13-3) ...
Setting up libxcb-randr0:armhf (1.13-3) ...
Setting up libxcb-xfixes0:armhf (1.13-3) ...
Setting up libxcb-icccm4:armhf (0.4.1-1+b1) ...
Setting up libxcb-render0:armhf (1.13-3) ...
Setting up libxcb-util0:armhf (0.3.8-3) ...
Setting up libhdf5-100:armhf (1.10.0-patch1+docs-4+b2) ...
Setting up python3 (3.6.5-3) ...
Setting up libdrm-amdgpu1:armhf (2.4.94-1+rpi1) ...
Setting up libboost1.62-dev:armhf (1.62.0+dfsg-8) ...
Setting up libhwloc-dev:armhf (1.11.10-3+rpi1) ...
Setting up libdrm-exynos1:armhf (2.4.94-1+rpi1) ...
Setting up libdrm-freedreno1:armhf (2.4.94-1+rpi1) ...
Setting up libblas-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libdrm-omap1:armhf (2.4.94-1+rpi1) ...
Setting up libgbm1:armhf (18.1.7-1) ...
Setting up libx11-6:armhf (2:1.6.6-1) ...
Setting up libinput10:armhf (1.12.0-1) ...
Setting up libgl1-mesa-dri:armhf (18.1.7-1) ...
Installing new version of config file /etc/drirc ...
Setting up tcl (8.6.0+9) ...
Setting up libdrm-tegra0:armhf (2.4.94-1+rpi1) ...
Setting up libpoppler74:armhf (0.63.0-2) ...
Setting up libsuperlu5:armhf (5.2.1+dfsg1-3) ...
Setting up libxkbcommon-x11-0:armhf (0.8.2-1) ...
Setting up python2 (2.7.15-3) ...
Setting up libogdi3.2-dev (3.2.1+ds-4) ...
Setting up gcc-8 (8.2.0-6+rpi1) ...
Setting up libwebp-dev:armhf (0.6.1-2) ...
Setting up libxcb-sync1:armhf (1.13-3) ...
Setting up libpython2-dev:armhf (2.7.15-3) ...
Setting up g++-8 (8.2.0-6+rpi1) ...
Setting up libpython-stdlib:armhf (2.7.15-3) ...
Setting up libkmlengine1:armhf (1.3.0-7) ...
Setting up libsuperlu-dev:armhf (5.2.1+dfsg1-3) ...
Setting up gir1.2-harfbuzz-0.0:armhf (1.8.8-2+rpi1) ...
Setting up libfreetype6-dev:armhf (2.8.1-2) ...
Setting up libice-dev:armhf (2:1.0.9-2) ...
Setting up ibverbs-providers:armhf (20.0-1) ...
Setting up libxcb-shm0:armhf (1.13-3) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxcb-shape0:armhf (1.13-3) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libxcb1-dev:armhf (1.13-3) ...
Setting up libxcb-glx0-dev:armhf (1.13-3) ...
Setting up libarpack2:armhf (3.5.0+real-2+b2) ...
Setting up libavahi-client3:armhf (0.7-4) ...
Setting up libxcb-keysyms1:armhf (0.4.0-1+b2) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libegl-mesa0:armhf (18.1.7-1) ...
Setting up libboost-dev:armhf (1.62.0.1+b8) ...
Setting up libx11-dev:armhf (2:1.6.6-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.6.6-1) ...
Setting up libibverbs-dev:armhf (20.0-1) ...
Setting up tcl-dev:armhf (8.6.0+9) ...
Setting up python3-distutils (3.6.6-1) ...
Setting up python (2.7.15-3) ...
Setting up libxcb-sync-dev:armhf (1.13-3) ...
Setting up fontconfig (2.13.0-5) ...
Regenerating fonts cache... done.
Setting up python-u-msgpack (2.1-1) ...
Setting up libfontconfig1-dev:armhf (2.13.0-5) ...
Setting up python-idna (2.6-1) ...
Setting up liblapack-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libx11-xcb-dev:armhf (2:1.6.6-1) ...
Setting up libpython-dev:armhf (2.7.15-3) ...
Setting up python-hyperlink (17.3.1-2) ...
Setting up libsm-dev:armhf (2:1.2.2-1+b3) ...
Setting up libxcb-render-util0:armhf (0.3.9-1+b1) ...
Setting up libhdf5-cpp-100:armhf (1.10.0-patch1+docs-4+b2) ...
Setting up python-asn1crypto (0.24.0-1) ...
Setting up libpoppler-dev:armhf (0.63.0-2) ...
Setting up python-attr (17.4.0-2) ...
Setting up python-snappy (0.5.3-1) ...
Setting up libxcb-image0:armhf (0.4.0-1+b2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxfixes3:armhf (1:5.0.3-1) ...
Setting up libglib2.0-dev-bin (2.56.1-2) ...
Setting up libarmadillo9 (1:9.100.5+dfsg-1) ...
Setting up gfortran-8 (8.2.0-6+rpi1) ...
Setting up python-pyasn1 (0.4.2-3) ...
Setting up libdrm-dev:armhf (2.4.94-1+rpi1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python-twisted-bin:armhf (18.7.0-2) ...
Setting up libvdpau1:armhf (1.1.1-8+b3) ...
Setting up libhdf5-dev (1.10.0-patch1+docs-4+b2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libxrender-dev:armhf (1:0.9.10-1) ...
Setting up python-pkg-resources (40.2.0-1) ...
Setting up libkmlconvenience1:armhf (1.3.0-7) ...
Setting up python-pyasn1-modules (0.2.1-0.2) ...
Setting up libglib2.0-dev:armhf (2.56.1-2) ...
Setting up cython (0.28.4-1) ...
Setting up python-wsaccel (0.6.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up libxcb-dri2-0-dev:armhf (1.13-3) ...
Setting up libxcb-render0-dev:armhf (1.13-3) ...
Setting up python-configparser (3.5.0b2-1) ...
Setting up libegl1:armhf (1.1.0-1) ...
Setting up python-cffi-backend (1.11.5-3) ...
Setting up libxft-dev:armhf (2.3.2-2) ...
Setting up python-incremental (16.10.1-3) ...
Setting up libxcb-dri3-dev:armhf (1.13-3) ...
Setting up python-six (1.11.0-2) ...
Setting up python-constantly (15.1.0-1) ...
Setting up libpq5:armhf (10.5-1) ...
Setting up python-cbor (1.0.0-1) ...
Setting up python-zope.interface (4.3.2-1+b1) ...
Setting up libkmlregionator1:armhf (1.3.0-7) ...
Setting up libxext-dev:armhf (2:1.3.3-1+b2) ...
Setting up libpango-1.0-0:armhf (1.42.4-1) ...
Setting up python-enum34 (1.1.6-2) ...
Setting up libxcb-shape0-dev:armhf (1.13-3) ...
Setting up libarpack2-dev:armhf (3.5.0+real-2+b2) ...
Setting up python-concurrent.futures (3.2.0-1) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libva-x11-2:armhf (2.2.0-1) ...
Setting up python-ubjson (0.12.0-1) ...
Setting up python-ipaddress (1.0.17-1) ...
Setting up libxxf86vm-dev:armhf (1:1.1.4-1+b2) ...
Setting up libxfixes-dev:armhf (1:5.0.3-1) ...
Setting up openssh-client (1:7.8p1-1) ...
Setting up python-trie (0.2+ds-1) ...
Setting up python-automat (0.6.0-1) ...
Setting up python-pil:armhf (5.2.0-2) ...
Setting up python-future (0.15.2-5) ...
update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode
update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode
Setting up libcups2:armhf (2.2.8-5) ...
Setting up libarmadillo-dev (1:9.100.5+dfsg-1) ...
Setting up libxi6:armhf (2:1.7.9-1) ...
Setting up gfortran (4:8.1.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.15.12-1) ...
Setting up libxcb-randr0-dev:armhf (1.13-3) ...
Setting up libxt-dev:armhf (1:1.1.5-1) ...
Setting up libpoppler-private-dev:armhf (0.63.0-2) ...
Setting up libpq-dev (10.5-1) ...
Setting up python-lz4 (1.1.0+dfsg-1) ...
Setting up libxdamage1:armhf (1:1.1.4-3) ...
Setting up python-nacl (1.2.1-3) ...
Setting up mesa-common-dev:armhf (18.1.7-1) ...
Setting up python-trollius (2.1~b1-5) ...
Setting up libxcb-xfixes0-dev:armhf (1.13-3) ...
Setting up libcurl3-gnutls:armhf (7.61.0-1) ...
Setting up libavutil56:armhf (7:4.0.2-1+b2) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libssh-gcrypt-4:armhf (0.8.1-1) ...
Setting up libcurl4:armhf (7.61.0-1) ...
Setting up libxdamage-dev:armhf (1:1.1.4-3) ...
Setting up python-qrcode (6.0-1) ...
update-alternatives: using /usr/bin/python2-qr to provide /usr/bin/qr (qr) in auto mode
Setting up libxss-dev:armhf (1:1.2.3-1) ...
Setting up libkml-dev:armhf (1.3.0-7) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-1) ...
Setting up libnetcdf13:armhf (1:4.6.1-3) ...
Setting up python-cryptography (2.3-1) ...
Setting up libxcb-present-dev:armhf (1.13-3) ...
Setting up libtheora0:armhf (1.1.1+dfsg.1-14) ...
Setting up libcurl4-gnutls-dev:armhf (7.61.0-1) ...
Setting up libnetcdf-dev (1:4.6.1-3) ...
Setting up libswscale5:armhf (7:4.0.2-1+b2) ...
Setting up libglx-mesa0:armhf (18.1.7-1) ...
Setting up libavutil-dev:armhf (7:4.0.2-1+b2) ...
Setting up libnetcdf-c++4 (4.2-11) ...
Setting up libnetcdf-cxx-legacy-dev (4.2-11) ...
Setting up tk8.6 (8.6.8-4) ...
Setting up libswresample3:armhf (7:4.0.2-1+b2) ...
Setting up python-openssl (18.0.0-1) ...
Setting up libtheora-dev:armhf (1.1.1+dfsg.1-14) ...
Setting up tk8.6-dev:armhf (8.6.8-4) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-1) ...
Setting up libhdf4-alt-dev (4.2.13-4) ...
Setting up libswscale-dev:armhf (7:4.0.2-1+b2) ...
Setting up tk (8.6.0+9) ...
Setting up libswresample-dev:armhf (7:4.0.2-1+b2) ...
Setting up libglx0:armhf (1.1.0-1) ...
Setting up python-service-identity (16.0.0-2) ...
Setting up tk-dev:armhf (8.6.0+9) ...
Setting up python-twisted-core (18.7.0-2) ...
Setting up libgl1:armhf (1.1.0-1) ...
Setting up python-twisted (18.7.0-2) ...
Setting up libglu1-mesa:armhf (9.0.0-2.1) ...
Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ...
Setting up python-txaio (2.8.1-1) ...
Setting up libglvnd-dev:armhf (1.1.0-1) ...
Setting up libgl1-mesa-dev:armhf (18.1.7-1) ...
Setting up libgl2ps-dev (1.4.0+dfsg1-2) ...
Setting up python-autobahn (17.10.1+dfsg1-3) ...
Setting up libglu1-mesa-dev:armhf (9.0.0-2.1) ...
Setting up odbcinst (2.3.6-0.1) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up odbcinst1debian2:armhf (2.3.6-0.1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up unixodbc-dev:armhf (2.3.6-0.1) ...
Setting up libharfbuzz-icu0:armhf (1.8.8-2+rpi1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libxslt1.1:armhf (1.1.32-2) ...
Setting up libhwloc-plugins:armhf (1.11.10-3+rpi1) ...
Setting up libspatialite7:armhf (4.3.0a-5+b2) ...
Setting up shared-mime-info (1.9-2) ...
Setting up icu-devtools (60.2-6) ...
Setting up libspatialite-dev:armhf (4.3.0a-5+b2) ...
Setting up libharfbuzz-dev:armhf (1.8.8-2+rpi1) ...
Setting up libxerces-c3.2:armhf (3.2.1+debian-2+b2) ...
Setting up libqt5core5a:armhf (5.11.1+dfsg-7+rpi1) ...
Setting up libqt5dbus5:armhf (5.11.1+dfsg-7+rpi1) ...
Setting up libdap25:armhf (3.19.1-2) ...
Setting up libqt5network5:armhf (5.11.1+dfsg-7+rpi1) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Setting up gettext (0.19.8.1-7) ...
Setting up libarchive13:armhf (3.2.2-5) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.36.12-2) ...
Setting up libbluray2:armhf (1:1.0.2-3) ...
Setting up libpmix2:armhf (3.0.1-2) ...
Setting up libicu-dev (60.2-6) ...
Setting up libxml2-dev:armhf (2.9.4+dfsg1-7) ...
Setting up libdapclient6v5:armhf (3.19.1-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libdapserver7v5:armhf (3.19.1-2) ...
Setting up libqt5positioning5:armhf (5.11.1+dfsg-4) ...
Setting up libqt5gui5:armhf (5.11.1+dfsg-7+rpi1) ...
Setting up cmake (3.12.1-1) ...
Setting up libqt5qml5:armhf (5.11.1-5) ...
Setting up libqt5quick5:armhf (5.11.1-5) ...
Setting up libqt5sensors5:armhf (5.11.1-3) ...
Setting up libxerces-c-dev (3.2.1+debian-2+b2) ...
Setting up libopenmpi3:armhf (3.1.2-1+rpi1) ...
Setting up libhdf5-openmpi-100:armhf (1.10.0-patch1+docs-4+b2) ...
Setting up libqt5widgets5:armhf (5.11.1+dfsg-7+rpi1) ...
Setting up librsvg2-2:armhf (2.40.20-3) ...
Setting up libdap-dev:armhf (3.19.1-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libgdal20 (2.3.1+dfsg-3) ...
Setting up openmpi-bin (3.1.2-1+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: error: no alternatives for mpi
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libqt5printsupport5:armhf (5.11.1+dfsg-7+rpi1) ...
Setting up libqt5opengl5:armhf (5.11.1+dfsg-7+rpi1) ...
Setting up libqt5webchannel5:armhf (5.11.1-3) ...
Setting up mpi-default-bin (1.13) ...
Setting up debhelper (11.3.5) ...
Setting up libavcodec58:armhf (7:4.0.2-1+b2) ...
Setting up libchromaprint1:armhf (1.4.3-2+b1) ...
Setting up libgdal-dev (2.3.1+dfsg-3) ...
Setting up dh-autoreconf (19) ...
Setting up libavformat58:armhf (7:4.0.2-1+b2) ...
Setting up libqt5webkit5:armhf (5.212.0~alpha2-15+rpi1) ...
Setting up libopenmpi-dev:armhf (3.1.2-1+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libavcodec-dev:armhf (7:4.0.2-1+b2) ...
Setting up mpi-default-dev (1.13) ...
Setting up libhdf5-openmpi-dev (1.10.0-patch1+docs-4+b2) ...
update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
Setting up libvtk6.3 (6.3.0+dfsg2-2+b3) ...
Setting up libavformat-dev:armhf (7:4.0.2-1+b2) ...
Setting up libvtk6.3-qt (6.3.0+dfsg2-2+b3) ...
Setting up python-mpi4py (2.0.0-3+b2) ...
Setting up vtk6 (6.3.0+dfsg2-2+b3) ...
Setting up libvtk6-jni (6.3.0+dfsg2-2+b3) ...
Setting up libhdf5-mpi-dev (1.10.0-patch1+docs-4+b2) ...
Setting up tcl-vtk6 (6.3.0+dfsg2-2+b3) ...
Setting up python-vtk6 (6.3.0+dfsg2-2+b3) ...
Setting up libvtk6-java (6.3.0+dfsg2-2+b3) ...
Setting up libvtk6-dev (6.3.0+dfsg2-2+b3) ...
Setting up sbuild-build-depends-lammps-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-2+rpi1 dpkg-dev_1.19.0.5 g++-8_8.2.0-6+rpi1 gcc-8_8.2.0-6+rpi1 libc6-dev_2.27-5+rpi1 libstdc++-8-dev_8.2.0-6+rpi1 libstdc++6_8.2.0-6+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.117 apt_1.6.3 autoconf_2.69-11 automake_1:1.16.1-1.1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-2+rpi1 binutils-arm-linux-gnueabihf_2.31.1-2+rpi1 binutils-common_2.31.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.12.1-1 cmake-data_3.12.1-1 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.2.0-6+rpi1 cython_0.28.4-1 dash_0.5.8-2.10 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.3.5 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.9-1+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 e2fsprogs-l10n_1.44.3-1 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20171230-2 fontconfig_2.13.0-5 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 g++_4:8.1.0-1+rpi1 g++-8_8.2.0-6+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-7-base_7.3.0-19 gcc-8_8.2.0-6+rpi1 gcc-8-base_8.2.0-6+rpi1 gdal-data_2.3.1+dfsg-3 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gfortran_4:8.1.0-1+rpi1 gfortran-8_8.2.0-6+rpi1 gir1.2-glib-2.0_1.56.1-1 gir1.2-harfbuzz-0.0_1.8.8-2+rpi1 gnupg_2.2.9-1+rpi1 gnupg-agent_2.2.9-1+rpi1 gnupg-l10n_2.2.9-1+rpi1 gnupg-utils_2.2.9-1+rpi1 gpg_2.2.9-1+rpi1 gpg-agent_2.2.9-1+rpi1 gpg-wks-client_2.2.9-1+rpi1 gpg-wks-server_2.2.9-1+rpi1 gpgconf_2.2.9-1+rpi1 gpgsm_2.2.9-1+rpi1 gpgv_2.2.9-1+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2 hdf5-helpers_1.10.0-patch1+docs-4+b2 hostname_3.20 ibverbs-providers_20.0-1 icu-devtools_60.2-6 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 iso-codes_4.1-1 klibc-utils_2.0.4-14+rpi1 kmod_25-1 libacl1_2.2.52-3 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapparmor1_2.13-8 libapt-pkg5.0_1.6.3 libarchive-zip-perl_1.64-1 libarchive13_3.2.2-5 libargon2-1_0~20171227-0.1 libarmadillo-dev_1:9.100.5+dfsg-1 libarmadillo9_1:9.100.5+dfsg-1 libarpack2_3.5.0+real-2+b2 libarpack2-dev_3.5.0+real-2+b2 libasan5_8.2.0-6+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-6+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libavahi-client3_0.7-4 libavahi-common-data_0.7-4 libavahi-common3_0.7-4 libavcodec-dev_7:4.0.2-1+b2 libavcodec58_7:4.0.2-1+b2 libavformat-dev_7:4.0.2-1+b2 libavformat58_7:4.0.2-1+b2 libavutil-dev_7:4.0.2-1+b2 libavutil56_7:4.0.2-1+b2 libbinutils_2.31.1-2+rpi1 libblas-dev_3.8.0-1 libblas3_3.8.0-1 libblkid1_2.32.1-0.1 libbluray2_1:1.0.2-3 libboost-dev_1.62.0.1+b8 libboost1.62-dev_1.62.0+dfsg-8 libbrotli1_1.0.5-2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-5+rpi1 libc-dev-bin_2.27-5+rpi1 libc6_2.27-5+rpi1 libc6-dev_2.27-5+rpi1 libcairo2_1.15.12-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcap2-bin_1:2.25-1.2 libcc1-0_8.2.0-6+rpi1 libcharls-dev_1.1.0+dfsg-2 libcharls1_1.1.0+dfsg-2 libchromaprint1_1.4.3-2+b1 libcodec2-0.8.1_0.8.1-1 libcom-err2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2 libcryptsetup4_2:1.7.5-1 libcups2_2.2.8-5 libcurl3-gnutls_7.61.0-1 libcurl4_7.61.0-1 libcurl4-gnutls-dev_7.61.0-1 libdap-dev_3.19.1-2 libdap25_3.19.1-2 libdapclient6v5_3.19.1-2 libdapserver7v5_3.19.1-2 libdatrie1_0.2.12-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.10-1 libdebconfclient0_0.244 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdouble-conversion1_2.0.1-5 libdpkg-perl_1.19.0.5 libdrm-amdgpu1_2.4.94-1+rpi1 libdrm-common_2.4.94-1+rpi1 libdrm-dev_2.4.94-1+rpi1 libdrm-etnaviv1_2.4.94-1+rpi1 libdrm-exynos1_2.4.94-1+rpi1 libdrm-freedreno1_2.4.94-1+rpi1 libdrm-nouveau2_2.4.94-1+rpi1 libdrm-omap1_2.4.94-1+rpi1 libdrm-radeon1_2.4.94-1+rpi1 libdrm-tegra0_2.4.94-1+rpi1 libdrm2_2.4.94-1+rpi1 libedit2_3.1-20180525-1 libegl-mesa0_18.1.7-1 libegl1_1.1.0-1 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xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 13 18:53:21 2018 UTC
gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./lammps_0~20180822.gitb47e49223+dfsg1-2.dsc
dpkg-source: info: extracting lammps in /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1
dpkg-source: info: unpacking lammps_0~20180822.gitb47e49223+dfsg1.orig.tar.xz
dpkg-source: info: unpacking lammps_0~20180822.gitb47e49223+dfsg1-2.debian.tar.xz
dpkg-source: info: applying 10_enable_spglib.patch
dpkg-source: info: applying 20_set_potentials_path.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-d2e17c36-9cb7-4500-b719-4ea5bfc4d8af
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package lammps
dpkg-buildpackage: info: source version 0~20180822.gitb47e49223+dfsg1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build lammps-0~20180822.gitb47e49223+dfsg1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=cmake --builddirectory=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1'
dh_auto_clean
rm -rf /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build
make[1]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1'
dh_clean -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build
debian/rules build-arch
dh build-arch --sourcedirectory=cmake --builddirectory=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build
dh_update_autotools_config -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build
dh_autoreconf -a -O--sourcedirectory=cmake -O--builddirectory=/<<BUILDDIR>>/lammps-0\~20180822.gitb47e49223\+dfsg1/debian/build
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1'
dh_auto_configure -- \
-DPKG_ASPHERE=ON \
-DPKG_BODY=ON \
-DPKG_CLASS2=ON \
-DPKG_COLLOID=ON \
-DPKG_COMPRESS=ON \
-DPKG_CORESHELL=ON \
-DPKG_DIPOLE=ON \
-DPKG_GPU=ON \
-DPKG_GRANULAR=ON \
-DPKG_KIM=OFF \
-DPKG_KSPACE=ON \
-DPKG_MANYBODY=ON \
-DPKG_MC=ON \
-DPKG_MEAM=ON \
-DPKG_MISC=ON \
-DPKG_MOLECULE=ON \
-DPKG_MPIIO=ON \
-DPKG_OPT=ON \
-DPKG_PERI=ON \
-DPKG_POEMS=ON \
-DPKG_PYTHON=ON \
-DPKG_QEQ=ON \
-DPKG_REAX=OFF \
-DPKG_REPLICA=ON \
-DPKG_RIGID=ON \
-DPKG_SHOCK=ON \
-DPKG_SNAP=ON \
-DPKG_SRD=ON \
-DPKG_USER-ATC=ON \
-DPKG_USER-AWPMD=ON \
-DPKG_USER-BOCS=ON \
-DPKG_USER-CGDNA=ON \
-DPKG_USER-CGSDK=ON \
-DPKG_USER-DIFFRACTION=ON \
-DPKG_USER-DPD=ON \
-DPKG_USER-DRUDE=ON \
-DPKG_USER-EFF=ON \
-DPKG_USER-FEP=ON \
-DPKG_USER-H5MD=ON \
-DPKG_USER-LB=ON \
-DPKG_USER-MANIFOLD=ON \
-DPKG_USER-MEAMC=ON \
-DPKG_USER-MESO=ON \
-DPKG_USER-MGPT=ON \
-DPKG_USER-MISC=ON \
-DPKG_USER-MOFFF=ON \
-DPKG_USER-MOLFILE=ON \
-DPKG_USER-NETCDF=ON \
-DPKG_USER-OMP=ON \
-DPKG_USER-PHONON=ON \
-DPKG_USER-QTB=ON \
-DPKG_USER-REAXC=OFF \
-DPKG_USER-SMD=ON \
-DPKG_USER-SMTBQ=ON \
-DPKG_USER-SPH=ON \
-DPKG_USER-TALLY=ON \
-DPKG_USER-UEF=ON \
-DPKG_USER-VTK=ON \
-DPKG_VORONOI=ON
cd debian/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DPKG_ASPHERE=ON -DPKG_BODY=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_DIPOLE=ON -DPKG_GPU=ON -DPKG_GRANULAR=ON -DPKG_KIM=OFF -DPKG_KSPACE=ON -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MEAM=ON -DPKG_MISC=ON -DPKG_MOLECULE=ON -DPKG_MPIIO=ON -DPKG_OPT=ON -DPKG_PERI=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_REAX=OFF -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SNAP=ON -DPKG_SRD=ON -DPKG_USER-ATC=ON -DPKG_USER-AWPMD=ON -DPKG_USER-BOCS=ON -DPKG_USER-CGDNA=ON -DPKG_USER-CGSDK=ON -DPKG_USER-DIFFRACTION=ON -DPKG_USER-DPD=ON -DPKG_USER-DRUDE=ON -DPKG_USER-EFF=ON -DPKG_USER-FEP=ON -DPKG_USER-H5MD=ON -DPKG_USER-LB=ON -DPKG_USER-MANIFOLD=ON -DPKG_USER-MEAMC=ON -DPKG_USER-MESO=ON -DPKG_USER-MGPT=ON -DPKG_USER-MISC=ON -DPKG_USER-MOFFF=ON -DPKG_USER-MOLFILE=ON -DPKG_USER-NETCDF=ON -DPKG_USER-OMP=ON -DPKG_USER-PHONON=ON -DPKG_USER-QTB=ON -DPKG_USER-REAXC=OFF -DPKG_USER-SMD=ON -DPKG_USER-SMTBQ=ON -DPKG_USER-SPH=ON -DPKG_USER-TALLY=ON -DPKG_USER-UEF=ON -DPKG_USER-VTK=ON -DPKG_VORONOI=ON ../../cmake
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Running check for auto-generated files from make-based build system
-- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- The Fortran compiler identification is GNU 8.2.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- The C compiler identification is GNU 8.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP_Fortran: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29")
-- Checking for module 'fftw3'
-- Found fftw3, version 3.3.8
-- Found FFTW3: /usr/lib/arm-linux-gnueabihf/libfftw3.so
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Found PythonInterp: /usr/bin/python (found version "2.7.15")
-- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython2.7.so (found version "2.7.15+")
-- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "62")
-- Found PNG: /usr/lib/arm-linux-gnueabihf/libpng.so (found version "1.6.34")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found GZIP: /bin/gzip
-- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE)
-- Found VORO: /usr/lib/arm-linux-gnueabihf/libvoro++.so
-- Found NetCDF: /usr/lib/arm-linux-gnueabihf/libnetcdf.so
-- The imported target "vtkRenderingPythonTkWidgets" references the file
"/usr/lib/arm-linux-gnueabihf/libvtkRenderingPythonTkWidgets.so"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-6.3/VTKTargets.cmake"
but not all the files it references.
-- The imported target "vtk" references the file
"/usr/bin/vtk"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-6.3/VTKTargets.cmake"
but not all the files it references.
-- Looking for C++ include math.h
-- Looking for C++ include math.h - found
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.0.1")
-- Looking for CL_VERSION_2_2
-- Looking for CL_VERSION_2_2 - found
-- Found OpenCL: /usr/lib/arm-linux-gnueabihf/libOpenCL.so (found version "2.2")
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/atom_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/beck_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_long_cs_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_wolf_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/born_coul_wolf_cs_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_coul_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/buck_coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/charmm_long_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/colloid_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_debye_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_dsf_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/coul_long_cs_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/device_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_lj_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_lj_sf_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dipole_long_lj_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/dpd_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/eam_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/ellipsoid_nbor_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gauss_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj96_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_class2_long_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_debye_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_coul_msm_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_cubic_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_dsf_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_expand_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_expand_coul_long_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_gromacs_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_sdk_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/lj_sdk_long_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/mie_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/morse_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/neighbor_cpu_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/neighbor_gpu_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/pppm_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/re_squared_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/re_squared_lj_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/soft_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/sw_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/table_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_mod_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/tersoff_zbl_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/ufm_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/vashishta_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/yukawa_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/yukawa_colloid_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/zbl_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gayberne_cl.h...
Creating /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu/gayberne_lj_cl.h...
-- Generating style_angle.h...
-- Generating style_atom.h...
-- Generating style_body.h...
-- Generating style_bond.h...
-- Generating style_command.h...
-- Generating style_compute.h...
-- Generating style_dihedral.h...
-- Generating style_dump.h...
-- Generating style_fix.h...
-- Generating style_improper.h...
-- Generating style_integrate.h...
-- Generating style_kspace.h...
-- Generating style_minimize.h...
-- Generating style_nbin.h...
-- Generating style_npair.h...
-- Generating style_nstencil.h...
-- Generating style_ntopo.h...
-- Generating style_pair.h...
-- Generating style_reader.h...
-- Generating style_region.h...
-- Generating lmpinstalledpkgs.h...
-- Building package: ASPHERE
-- Building package: BODY
-- Building package: CLASS2
-- Building package: COLLOID
-- Building package: COMPRESS
-- Building package: DIPOLE
-- Building package: GRANULAR
-- Building package: KSPACE
-- Building package: MANYBODY
-- Building package: MC
-- Building package: MEAM
-- Building package: MISC
-- Building package: MOLECULE
-- Building package: PERI
-- Building package: REPLICA
-- Building package: RIGID
-- Building package: SHOCK
-- Building package: SNAP
-- Building package: SRD
-- Building package: PYTHON
-- Building package: MPIIO
-- Building package: VORONOI
-- Building package: POEMS
-- Building package: USER-ATC
-- Building package: USER-AWPMD
-- Building package: USER-BOCS
-- Building package: USER-CGDNA
-- Building package: USER-MESO
-- Building package: USER-CGSDK
-- Building package: USER-DIFFRACTION
-- Building package: USER-DPD
-- Building package: USER-DRUDE
-- Building package: USER-EFF
-- Building package: USER-FEP
-- Building package: USER-H5MD
-- Building package: USER-LB
-- Building package: USER-MANIFOLD
-- Building package: USER-MEAMC
-- Building package: USER-MGPT
-- Building package: USER-MISC
-- Building package: USER-MOFFF
-- Building package: USER-MOLFILE
-- Building package: USER-NETCDF
-- Building package: USER-PHONON
-- Building package: USER-QTB
-- Building package: USER-SMD
-- Building package: USER-SMTBQ
-- Building package: USER-SPH
-- Building package: USER-TALLY
-- Building package: USER-UEF
-- Building package: USER-VTK
-- Building package: USER-OMP
-- Building package: OPT
-- Building package: GPU
-- The following packages have been found:
* MPI
* OpenMP
* PkgConfig
* FFTW3
* BLAS
* Threads
* LAPACK
* PythonInterp
* PythonLibs
* JPEG
* PNG
* VORO
* NetCDF
* Eigen3
* VTK
* ZLIB
* HDF5
* OpenCL
-- <<< Build configuration >>>
Build type None
Install path /usr
Compilers and Flags:
C++ Compiler /usr/bin/c++
Type GNU
Version 8.2.0
C++ Flags -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
Defines LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;FFT_FFTW;LMP_PYTHON;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LMP_HAS_NETCDF;NC_64BIT_DATA=0x0020;vtkFiltersFlowPaths_AUTOINIT=1(vtkFiltersParallelFlowPaths);vtkIOExodus_AUTOINIT=1(vtkIOParallelExodus);vtkIOGeometry_AUTOINIT=1(vtkIOMPIParallel);vtkIOImage_AUTOINIT=1(vtkIOMPIImage);vtkIOParallel_AUTOINIT=1(vtkIOMPIParallel);vtkIOSQL_AUTOINIT=2(vtkIOMySQL,vtkIOPostgreSQL);vtkRenderingContext2D_AUTOINIT=1(vtkRenderingContextOpenGL);vtkRenderingCore_AUTOINIT=3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL);vtkRenderingFreeType_AUTOINIT=2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib);vtkRenderingLIC_AUTOINIT=1(vtkRenderingParallelLIC);vtkRenderingVolume_AUTOINIT=1(vtkRenderingVolumeOpenGL);LAMMPS_VTK
-- Fortran Compiler /usr/bin/gfortran
Type GNU
Version 8.2.0
Fortran Flags -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong
-- C Compiler /usr/bin/cc
Type GNU
Version 8.2.0
C Flags -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
-- Linker flags:
Executable -Wl,-z,relro
-- Static libraries
-- Link libraries: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so;/usr/lib/arm-linux-gnueabihf/libfftw3.so;/usr/lib/arm-linux-gnueabihf/libpython2.7.so;/usr/lib/arm-linux-gnueabihf/libjpeg.so;/usr/lib/arm-linux-gnueabihf/libpng.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libvoro++.so;molfile;/usr/lib/arm-linux-gnueabihf/libnetcdf.so;vtkChartsCore;vtkCommonColor;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkInfovisCore;vtkFiltersExtraction;vtkCommonExecutionModel;vtkFiltersCore;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/arm-linux-gnueabihf/libfreetype.so;vtkftgl;vtkDICOMParser;vtkDomainsChemistry;vtkIOXML;vtkIOGeometry;vtkIOCore;vtkIOXMLParser;/usr/lib/arm-linux-gnueabihf/libexpat.so;vtkFiltersAMR;vtkParallelCore;vtkIOLegacy;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelFlowPaths;vtkParallelMPI;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersPython;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkIOImage;vtkmetaio;/usr/lib/arm-linux-gnueabihf/libtiff.so;vtkInfovisBoostGraphAlgorithms;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingVolume;vtkViewsCore;/usr/lib/arm-linux-gnueabihf/libproj.so;vtkIOAMR;/usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/arm-linux-gnueabihf/libnetcdf_c++.so;vtkIOExport;vtkRenderingGL2PS;vtkRenderingContextOpenGL;vtkRenderingOpenGL;/usr/lib/arm-linux-gnueabihf/libgl2ps.so;vtkRenderingLabel;vtkIOFFMPEG;vtkIOMovie;/usr/lib/arm-linux-gnueabihf/libtheoraenc.so;/usr/lib/arm-linux-gnueabihf/libtheoradec.so;/usr/lib/arm-linux-gnueabihf/libogg.so;vtkIOGDAL;vtkIOGeoJSON;vtkIOImport;vtkIOInfovis;/usr/lib/arm-linux-gnueabihf/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;/usr/lib/arm-linux-gnueabihf/libjsoncpp.so;vtkIOMySQL;vtkIOSQL;sqlite3;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLIC;vtkRenderingLOD;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava;m;meam;poems;atc;awpmd;h5md;gpu;gfortran;gcc_s;gcc;c
-- Using mpi with headers in /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi;/usr/lib/arm-linux-gnueabihf/openmpi/include and /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so
-- GPU Api: OPENCL
-- OCL Tune: GENERIC
-- GPU Precision: MIXED
-- Using FFTW3 as FFT
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
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/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F" -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F.o"
f951: Warning: Nonexistent include directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR' [-Wmissing-include-dirs]
[ 0%] Building CXX object CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o
[ 0%] Building C object CMakeFiles/h5md.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o
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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp"
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -I/usr/include/hdf5/serial -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/h5md.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c"
[ 0%] Building C object CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c"
/usr/bin/cmake -E cmake_copy_f90_mod meam_data.mod CMakeFiles/meam.dir/meam_data.mod.stamp GNU
/usr/bin/cmake -E touch CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F.o.provides.build
[ 0%] Building Fortran object CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F.o
/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F" -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F.o"
f951: Warning: Nonexistent include directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR' [-Wmissing-include-dirs]
[ 0%] Building Fortran object CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o
/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F" -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o"
f951: Warning: Nonexistent include directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR' [-Wmissing-include-dirs]
[ 0%] Building Fortran object CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o
/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F" -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o"
f951: Warning: Nonexistent include directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR' [-Wmissing-include-dirs]
[ 0%] Linking C static library libh5md.a
/usr/bin/cmake -P CMakeFiles/h5md.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1
/usr/bin/ar qc libh5md.a "CMakeFiles/h5md.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/src/ch5md.c.o"
/usr/bin/ranlib libh5md.a
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 0%] Built target h5md
make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
cd "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color=
[ 1%] Building CXX object CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp"
[ 1%] Building Fortran object CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o
/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F" -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o"
f951: Warning: Nonexistent include directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR' [-Wmissing-include-dirs]
Scanning dependencies of target gpu
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 1%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp"
Scanning dependencies of target atc
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 1%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp"
[ 1%] Building Fortran object CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o
/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F" -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o"
f951: Warning: Nonexistent include directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR' [-Wmissing-include-dirs]
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_answer.cpp:16:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 1%] Building Fortran object CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F.o
/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F" -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F.o"
f951: Warning: Nonexistent include directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR' [-Wmissing-include-dirs]
[ 2%] Building Fortran object CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F.o
/usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F" -o "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F.o"
f951: Warning: Nonexistent include directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR' [-Wmissing-include-dirs]
[ 2%] Linking Fortran static library libmeam.a
/usr/bin/cmake -P CMakeFiles/meam.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/meam.dir/link.txt --verbose=1
/usr/bin/ar qc libmeam.a "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/fm_exp.c.o" "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_cleanup.F.o" "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_data.F.o" "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_final.F.o" "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_dens_init.F.o" "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_force.F.o" "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_done.F.o" "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_global.F.o" "CMakeFiles/meam.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam/meam_setup_param.F.o"
/usr/bin/ranlib libmeam.a
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 2%] Built target meam
make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
cd "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color=
Scanning dependencies of target poems
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body.cpp"
[ 2%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.cpp:16:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/body23joint.cpp"
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatmap.cpp"
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/colmatrix.cpp"
[ 2%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp"
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/eulerparameters.cpp"
[ 2%] Building CXX object CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.cpp:16:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fastmatrixops.cpp"
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/fixedpoint.cpp"
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/freebodyjoint.cpp"
[ 2%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp"
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/inertialframe.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.cpp:17:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt<double, 2>&}; _Tp = Vector_Nt<double, 2>; _Alloc = std::allocator<Vector_Nt<double, 2> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Vector_Nt<double, 2> >::iterator' {aka '__gnu_cxx::__normal_iterator<Vector_Nt<double, 2>*, std::vector<Vector_Nt<double, 2> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 2%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/joint.cpp"
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {WavePacket}; _Tp = WavePacket; _Alloc = std::allocator<WavePacket>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<WavePacket>::iterator' {aka '__gnu_cxx::__normal_iterator<WavePacket*, std::vector<WavePacket> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<WavePacket>::iterator' {aka '__gnu_cxx::__normal_iterator<WavePacket*, std::vector<WavePacket> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<WavePacket*, std::vector<WavePacket> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Vector_Nt<double, 2>*, std::vector<Vector_Nt<double, 2> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat3x3.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat3x3.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat3x3.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat4x4.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" 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[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mat6x6.cpp"
[ 3%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp"
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrix.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.cpp:17:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/matrixfun.cpp"
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp.o
[ 3%] Linking CXX static library libawpmd.a
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/mixedjoint.cpp"
/usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1
/usr/bin/ar qc libawpmd.a "CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o" "CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" "CMakeFiles/awpmd.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o"
/usr/bin/ranlib libawpmd.a
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 3%] Built target awpmd
make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
cd "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build" "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color=
Scanning dependencies of target ocl_get_devices
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 3%] Building CXX object CMakeFiles/ocl_get_devices.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DUCL_OPENCL -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/ocl_get_devices.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:35,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/norm.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:28,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator<ucl_opencl::OCLProperties>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ucl_opencl::OCLProperties>::iterator' {aka '__gnu_cxx::__normal_iterator<ucl_opencl::OCLProperties*, std::vector<ucl_opencl::OCLProperties> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:28,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ucl_opencl::OCLProperties*, std::vector<ucl_opencl::OCLProperties> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onbody.cpp"
[ 3%] Linking CXX executable ocl_get_devices
/usr/bin/cmake -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -rdynamic "CMakeFiles/ocl_get_devices.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -o ocl_get_devices -lOpenCL
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 3%] Built target ocl_get_devices
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onfunctions.cpp"
[ 3%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp"
[ 3%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingEnergy.cpp"
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/onsolver.cpp"
[ 3%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMass.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.cpp:17:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/particle.cpp"
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemsobject.cpp"
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/poemstreenode.cpp"
[ 3%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/point.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/prismaticjoint.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/revolutejoint.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rigidbody.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rigidbody.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rigidbody.cpp"
[ 4%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/rowmatrix.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.cpp:16:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/solver.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/sphericaljoint.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/sphericaljoint.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/sphericaljoint.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/system.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect3.cpp"
[ 4%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp"
[ 4%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp"
[ 4%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect4.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.cpp:16:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/vect6.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualcolmatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" 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[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualmatrix.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualrowmatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualrowmatrix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/virtualrowmatrix.cpp"
[ 4%] Building CXX object CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/workspace.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/workspace.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems/workspace.cpp"
[ 4%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 5%] Linking CXX static library libpoems.a
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/cmake -P CMakeFiles/poems.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/poems.dir/link.txt --verbose=1
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/usr/bin/ranlib libpoems.a
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 5%] Built target poems
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp.o
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[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp.o
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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_beck_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Coupling.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 5%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp"
[ 5%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 5%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp"
[ 5%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp"
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::add(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferKernel.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp"
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp"
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Method.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_Transfer.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_born_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp"
[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/BodyForce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/BodyForce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/BodyForce.cpp"
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp"
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 6%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CauchyBorn.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CauchyBorn.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CauchyBorn.cpp"
[ 6%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CBLattice.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 7%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CbPotential.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CbPotential.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/CbPotential.cpp"
[ 7%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp"
[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 7%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_buck_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 7%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ConcentrationRegulator.cpp"
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp"
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/set:60,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >; _KeyOfValue = std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >, std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/8/bits/stl_map.h: In member function 'virtual void ATC::ChargeRegulatorMethodEffectiveCharge::initialize()':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >, std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ChargeRegulator.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp.o
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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronChargeDensity.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp"
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_colloid_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronDragPower.cpp"
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp"
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronFlux.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp"
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatCapacity.cpp"
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronHeatFlux.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp"
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ElectronPhononExchange.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_debye_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.cpp"
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp"
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp"
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp"
[ 8%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
[ 8%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_coul_long_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 9%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp"
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const int&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >; _KeyOfValue = std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >]':
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >, std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.cpp"
In file included from /usr/include/c++/8/map:61,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/8/bits/stl_map.h: In member function 'void ATC::ExtrinsicModelElectrostatic::add_charged_surface(const string&, double)':
/usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> >, std::_Select1st<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >, std::less<int>, std::allocator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const int, std::pair<ATC_matrix::DenseVector<double>, double> > >'} changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp:16:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModel.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp"
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Interpolate.cpp"
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:28,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:28,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator<ucl_opencl::OCLProperties>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ucl_opencl::OCLProperties>::iterator' {aka '__gnu_cxx::__normal_iterator<ucl_opencl::OCLProperties*, std::vector<ucl_opencl::OCLProperties> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:28,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:28,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ucl_opencl::OCLProperties*, std::vector<ucl_opencl::OCLProperties> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp"
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Element.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Mesh.cpp:2:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FE_Engine.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dipole.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp"
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_dpd.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_dpd_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp"
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Function.cpp"
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp"
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/FieldManager.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp"
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/InterscaleOperators.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_eam_fs_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 10%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
__move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Distance = int; _Tp = std::pair<int, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/GhostManager.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(std::pair<int, double>, std::pair<int, double>)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'int ATC::GhostModifierDampedHarmonicLayers::find_layers()':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp"
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gauss_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 11%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KernelFunction.cpp"
[ 11%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator<Node>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Node>::iterator' {aka '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator<Node>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Node>::iterator' {aka '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const Node>]':
/usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
__find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Node*, std::vector<Node> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Node, Node)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In constructor 'KD_Tree::KD_Tree(std::vector<Node>*, std::vector<std::pair<int, std::vector<Node> > >*, int)':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
return __find_if(__first, __last, __pred,
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
return __find_if(__first, __last, __pred,
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In static member function 'static KD_Tree* KD_Tree::create_KD_tree(int, int, const DENS_MAT*, int, const ATC_matrix::Array2D<int>&)':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KD_Tree.cpp:1:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Node*, std::vector<Node> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.cpp:27:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 11%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp"
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_gayberne_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/KinetoThermostat.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MPI_Wrappers.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj96_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Material.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Kinetostat.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LinearSolver.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MeshReader.cpp"
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MoleculeSet.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp"
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PaqAtcUtility.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp: In member function 'void ATC::OutputManager::read_restart_file(std::__cxx11::string, ATC::RESTART_LIST*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp:164:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&myVal,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/NonLinearSolver.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp:5:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParDiagonalMatrix.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp"
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/OutputManager.cpp:5:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void ATC::OutputManager::write_data(double, ATC::OUTPUT_LIST*, const int*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp"
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 12%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SparseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SparseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SparseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SparseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ParSparseMatrix.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp"
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerPairQuantity.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp"
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp.o
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In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PhysicsModel.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PolynomialSolver.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp"
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PrescribedDataManager.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PoissonSolver.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Quadrature.cpp"
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp"
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp"
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_expand_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Stress.cpp"
[ 14%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp"
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:17,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix<T>::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array2D.h:9,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/SchrodingerSolver.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 14%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp"
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp"
[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp"
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Matrix.h:3,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/DenseMatrix.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixLibrary.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.h:5,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_charge.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp"
[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeFilter.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_mie_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp"
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_morse_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp"
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor.cpp:18:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_device.h:35,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_kernel.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_neighbor_shared.cpp:17:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp"
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.cpp:25:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm.h:20,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_pppm_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp"
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.cpp:27:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_ellipsoid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_re_squared_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp:1:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/AtomicRegulator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.h:4,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Thermostat.cpp:1:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp"
[ 15%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TimeIntegrator.cpp"
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_soft_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp"
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_sw_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp"
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_table_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp"
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp"
[ 16%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp"
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.h:21,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.cpp:26:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 16%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.h:8,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp:2:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > >::iterator' {aka '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD<double>}; _Tp = ATC_matrix::TRI_COORD<double>; _Alloc = std::allocator<ATC_matrix::TRI_COORD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.h:11,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.h:11,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.h:11,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferLibrary.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Vector.cpp"
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp:2:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD<double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Utility.h:15,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/MatrixDef.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/Array.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ATC_TypeDefs.h:14,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/LammpsInterface.h:25,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantity.h:7,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.h:6,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/TransferOperator.cpp:2:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const ATC_matrix::TRI_COORD<double>&, const ATC_matrix::TRI_COORD<double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm.h:21,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_ufm_ext.cpp:22:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
/usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix<T>::CountUniqueTriplets() [with T = double]':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ATC_matrix::TRI_COORD<double>*, std::vector<ATC_matrix::TRI_COORD<double>, std::allocator<ATC_matrix::TRI_COORD<double> > > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp"
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/ViscousStress.cpp"
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationDiffusion.cpp"
[ 17%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp"
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_three.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_vashishta_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronMomentum.cpp"
[ 17%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp"
[ 17%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp"
[ 18%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 18%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMomentum.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMomentum.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationMomentum.cpp"
[ 18%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPhononTemperature.cpp"
[ 18%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationPoisson.cpp"
[ 18%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp"
[ 18%] Building CXX object CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationSchrodinger.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationSchrodinger.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc/WeakEquationSchrodinger.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 18%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp"
[ 18%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp"
[ 18%] Building CXX object CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl_ext.cpp.o
/usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/gpu" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl_ext.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl_ext.cpp"
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_yukawa_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
[ 18%] Linking CXX static library libatc.a
/usr/bin/cmake -P CMakeFiles/atc.dir/cmake_clean_target.cmake
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In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.cpp:24:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
/usr/bin/ranlib libatc.a
In file included from /usr/include/CL/cl.h:36,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_macros.h:10,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/geryon/ocl_timer.h:27,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_atom.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_device.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_base_atomic.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl.h:19,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/gpu/lal_zbl_ext.cpp:20:
/usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)
#pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)")
^
make[3]: Leaving directory '/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build'
[ 18%] Built target atc
[ 18%] Linking CXX static library libgpu.a
/usr/bin/cmake -P CMakeFiles/gpu.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/gpu.dir/link.txt --verbose=1
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[ 18%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/main.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/main.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/main.cpp"
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle.cpp"
[ 18%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp"
[ 18%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp: In member function 'virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_zero.cpp:133:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:338:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&nstyles,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:347:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/angle_hybrid.cpp:350:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(keywords[m],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 18%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom.cpp"
[ 18%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_map.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_map.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_map.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_atomic.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_body.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_charge.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_charge.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_charge.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_ellipsoid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_ellipsoid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_ellipsoid.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_hybrid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_hybrid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_hybrid.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_line.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_line.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_line.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_sphere.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/atom_vec_tri.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/balance.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/balance.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/balance.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/body.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp"
[ 19%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/change_box.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/citeme.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp: In member function 'virtual void LAMMPS_NS::BondZero::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_zero.cpp:131:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:322:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&nstyles,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:331:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/bond_hybrid.cpp:334:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(keywords[m],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_brick.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_brick.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_brick.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_tiled.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_tiled.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/comm_tiled.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_aggregate_atom.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angle_local.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angmom_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angmom_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_angmom_chunk.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_bond_local.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_centro_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_centro_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_centro_atom.cpp"
[ 20%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_chunk_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cluster_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cna_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cna_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_cna_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_com_chunk.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_contact_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_coord_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dihedral_local.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dipole_chunk.cpp.o
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_displace_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dipole_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_dipole_chunk.cpp"
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_displace_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_displace_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_erotate_sphere_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_fragment_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_global_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_global_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_global_atom.cpp"
[ 21%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_group_group.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_group_group.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_group_group.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_gyration_chunk.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_heat_flux.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_heat_flux.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_heat_flux.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_hexorder_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_hexorder_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_hexorder_atom.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_improper_local.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_inertia_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_inertia_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_inertia_chunk.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_ke_atom.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_msd_chunk.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_omega_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_omega_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_omega_chunk.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_orientorder_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_orientorder_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_orientorder_atom.cpp"
[ 22%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pair_local.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pe_atom.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_pressure.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_atom.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_chunk.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_property_local.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_rdf.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce_region.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce_region.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_reduce_region.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_slice.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_stress_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_stress_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_stress_atom.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp.cpp"
[ 23%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_chunk.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_com.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_deform.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_deform.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_deform.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_partial.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_partial.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_partial.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_profile.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_profile.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_profile.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_ramp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_ramp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_ramp.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_region.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_region.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_region.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_temp_sphere.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_torque_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_torque_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_torque_chunk.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vacf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vacf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vacf.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/compute_vcm_chunk.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_atoms.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_bonds.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_box.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_box.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/create_box.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_atoms.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_atoms.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_atoms.cpp"
[ 24%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/delete_bonds.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:323:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&nstyles,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:332:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_hybrid.cpp:335:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(keywords[m],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dihedral_zero.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/displace_atoms.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/domain.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_atom.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_cfg.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_cfg.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_cfg.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_custom.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_dcd.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_image.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_local.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_movie.cpp"
[ 25%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/dump_xyz.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/error.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/finish.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_adapt.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_addforce.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_atom.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp: In member function 'virtual void LAMMPS_NS::FixAveChunk::end_of_step()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_chunk.cpp:1058:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
if (fileend > 0) ftruncate(fileno(fp),fileend);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_correlate.cpp:537:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
if (fileend > 0) ftruncate(fileno(fp),fileend);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo.cpp:828:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
if (fileend > 0) ftruncate(fileno(fp),fileend);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
if (fileend > 0) ftruncate(fileno(fp),fileend);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_aveforce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_aveforce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_aveforce.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_balance.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_balance.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_balance.cpp"
[ 26%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_box_relax.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp:700:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
if (fileend > 0) ftruncate(fileno(fp),fileend);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_ave_time.cpp:911:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
if (fileend > 0) ftruncate(fileno(fp),fileend);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_controller.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deform.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_deprecated.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_drag.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_dt_reset.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_dt_reset.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_dt_reset.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_enforce2d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_enforce2d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_enforce2d.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_external.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_gravity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_gravity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_gravity.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_group.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_group.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_group.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_heat.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_indent.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp: In member function 'virtual void LAMMPS_NS::FixHalt::end_of_step()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_halt.cpp:187:15: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'LAMMPS_NS::bigint' {aka 'long long int'} [-Wformat=]
sprintf(str,"Fix halt %s condition met on step %ld with value %g",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
id,update->ntimestep,attvalue);
~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_langevin.cpp"
[ 27%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_lineforce.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_minimize.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_momentum.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_move.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_neigh_history.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_neigh_history.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_neigh_history.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nh_sphere.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nph_sphere.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_npt_sphere.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_limit.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_noforce.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nve_sphere.cpp"
[ 28%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sllod.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sllod.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sllod.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_nvt_sphere.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_planeforce.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_press_berendsen.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_print.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_property_atom.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_read_restart.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_recenter.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_respa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_respa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_respa.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_restrain.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_restrain.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_restrain.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_setforce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_setforce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_setforce.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_chunk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_chunk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_chunk.cpp"
[ 29%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_rg.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_rg.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_rg.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_self.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_self.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_spring_self.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_force.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_force.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_force.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_store_state.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_berendsen.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csld.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csld.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csld.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csvr.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csvr.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_csvr.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_temp_rescale.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_tmd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_tmd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_tmd.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_vector.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_vector.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_vector.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_viscous.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_harmonic.cpp"
[ 30%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj1043.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj126.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj126.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj126.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj93.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj93.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_lj93.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_reflect.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_reflect.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_reflect.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/fix_wall_region.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/force.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/force.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/force.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/image.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:730:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&ngroup,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:742:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/group.cpp:746:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(names[i],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_group.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_group.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_group.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_neigh.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_neigh.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_neigh.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_store.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_time.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/imbalance_var.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper.cpp"
[ 31%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_zero.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:320:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&nstyles,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:329:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/improper_hybrid.cpp:332:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(keywords[m],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/info.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/input.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/integrate.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/irregular.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/kspace.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/lammps.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/lattice.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/lattice.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/lattice.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp: In function 'void lammps_create_atoms(void*, int, LAMMPS_NS::tagint*, int*, double*, double*, LAMMPS_NS::imageint*, int)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp:1517:19: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'LAMMPS_NS::bigint' {aka 'long long int'} [-Wformat=]
sprintf(str,"Library warning in lammps_create_atoms, "
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"invalid total atoms %ld %ld",lmp->atom->natoms,natoms_prev+n);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/library.cpp:1517:19: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'LAMMPS_NS::bigint' {aka 'long long int'} [-Wformat=]
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_extra.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_extra.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_extra.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_special.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_special.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/math_special.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/memory.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/memory.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/memory.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min.cpp"
[ 32%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_cg.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_cg.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_cg.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_fire.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_fire.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_fire.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_hftn.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_hftn.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_hftn.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_linesearch.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_linesearch.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_linesearch.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_quickmin.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_quickmin.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_quickmin.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_sd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_sd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/min_sd.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/minimize.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/minimize.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/minimize.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/molecule.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/molecule.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/molecule.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin_standard.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin_standard.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nbin_standard.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_list.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_list.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_list.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1363:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1380:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1383:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1386:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1389:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1392:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1395:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1405:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1422:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1425:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1428:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1431:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/modify.cpp:1434:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_request.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_request.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neigh_request.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neighbor.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neighbor.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/neighbor.cpp"
[ 33%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_copy.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_copy.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_copy.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_atomonly.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_atomonly.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_atomonly.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_ghost.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_ghost.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_bin_ghost.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_multi.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_multi.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_multi.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq_ghost.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq_ghost.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_full_nsq_ghost.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_atomonly_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_atomonly_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_atomonly_newton.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff_ghost.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff_ghost.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newtoff_ghost.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_bin_newton_tri.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newtoff.cpp"
[ 34%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_multi_newton_tri.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff_ghost.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff_ghost.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newtoff_ghost.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_nsq_newton.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newtoff.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newton.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newton_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newton_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_bin_newton_tri.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newtoff.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_respa_nsq_newton.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newtoff.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_bin_newton_tri.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newtoff.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_half_size_nsq_newton.cpp"
[ 35%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_halffull_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_halffull_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_halffull_newtoff.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_halffull_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_halffull_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_halffull_newton.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_respa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_respa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_respa.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on_oneside.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on_oneside.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/npair_skip_size_off2on_oneside.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_2d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_2d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_2d.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_3d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_3d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_bin_3d.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_ghost_bin_2d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_ghost_bin_2d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_ghost_bin_2d.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_ghost_bin_3d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_ghost_bin_3d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_ghost_bin_3d.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_2d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_2d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_2d.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_3d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_3d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_full_multi_3d.cpp"
[ 36%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newtoff.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_2d_newton_tri.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newtoff.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_bin_3d_newton_tri.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_2d_newtoff.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_ghost_bin_3d_newtoff.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newtoff.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_2d_newton_tri.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newtoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newtoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newtoff.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/nstencil_half_multi_3d_newton_tri.cpp"
[ 37%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_all.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_all.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_all.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_partial.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_partial.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_partial.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_template.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_template.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_angle_template.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_all.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_all.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_all.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_partial.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_partial.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_partial.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_template.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_template.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_bond_template.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_all.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_all.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_all.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_partial.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_partial.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_partial.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_template.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_template.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_dihedral_template.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_all.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_all.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_all.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_partial.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_partial.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_partial.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_template.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_template.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ntopo_improper_template.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/output.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/output.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/output.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair.cpp"
[ 38%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:282:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:286:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&AA[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:287:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&BB[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aa[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&beta[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:291:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_beck.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:334:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:338:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:339:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rho[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:340:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:341:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:342:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:343:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:376:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born.cpp:377:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rho[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:375:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_dsf.cpp:411:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:365:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:369:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rho[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:406:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alf,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_born_coul_wolf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:312:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:317:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rho[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:349:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:350:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck.cpp:351:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rho[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:406:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_buck_coul_cut.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:249:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:252:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:276:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:277:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_cut.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp:153:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp:154:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kappa,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp:155:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_debye.cpp:156:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:257:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:282:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:283:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_dsf.cpp:284:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_streitz.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_streitz.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_streitz.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:254:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alf,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:279:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_coul_wolf.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:319:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:323:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:324:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:325:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:353:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&temperature,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:354:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd.cpp:356:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:234:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:238:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:239:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:267:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&t_start,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:268:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&t_stop,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:269:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:270:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_dpd_tstat.cpp:271:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp"
[ 39%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp"
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid_overlay.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid_overlay.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid_overlay.cpp"
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:285:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:291:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:318:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:319:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_gauss.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:668:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&nstyles,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:685:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:688:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(keywords[m],sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:694:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:698:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(special_lj[m],sizeof(double),4,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:701:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_hybrid.cpp:705:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(special_coul[m],sizeof(double),4,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:612:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:616:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:617:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:618:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:647:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:648:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:649:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj96_cut.cpp:650:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp"
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp"
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:283:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:287:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cubic.cpp:317:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:606:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:610:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:611:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:612:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:641:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:642:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:643:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut.cpp:644:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp"
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:357:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:362:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:363:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:364:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_cut.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:174:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:175:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:176:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kappa,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:177:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_debye.cpp:178:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp"
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:380:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:384:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:385:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:420:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_dsf.cpp:421:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:375:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:379:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:380:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:381:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:412:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alf,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:413:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:414:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:415:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_cut_coul_wolf.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:328:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:332:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:333:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:334:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shift[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:335:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:364:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:365:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:366:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_expand.cpp:367:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:345:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:349:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:350:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:351:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:352:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:382:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:383:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:384:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs.cpp:385:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp"
[ 40%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:383:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_inner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_inner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:420:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:421:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:422:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:356:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:360:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:362:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:363:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:287:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:291:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:292:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:293:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_lj_smooth_linear.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:633:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:637:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:638:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:639:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamR[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:640:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamA[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:641:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:672:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:673:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:674:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_mie_cut.cpp:675:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:269:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:273:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:274:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:275:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:276:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:304:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:305:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_morse.cpp:306:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:250:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:254:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&prefactor[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:255:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_soft.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp: In member function 'void LAMMPS_NS::PairTable::read_table(LAMMPS_NS::PairTable::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:381:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:415:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp: In member function 'virtual void LAMMPS_NS::PairTable::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:977:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabstyle,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:978:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tablength,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:979:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ewaldflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:980:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&pppmflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:981:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&msmflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:982:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dispersionflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_table.cpp:983:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tip4pflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zbl.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zbl.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zbl.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:290:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:294:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:295:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:296:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_ufm.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:256:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:260:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:261:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:288:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kappa,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:289:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_yukawa.cpp:291:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp"
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/procmap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/procmap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/procmap.cpp"
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/python.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/python.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/python.cpp"
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_mars.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_mars.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_mars.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp:176:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp:180:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp:205:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/pair_zero.cpp:206:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&coeffflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_park.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_park.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/random_park.cpp"
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/rcb.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/rcb.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/rcb.cpp"
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_data.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_data.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_data.cpp"
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_dump.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_dump.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_dump.cpp"
[ 41%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::command(int, char**)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:304:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:308:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&procsperfile,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:311:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:315:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:321:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(buf,sizeof(double),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:381:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:384:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&procsperfile,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:393:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:397:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&n,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:403:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(buf,sizeof(double),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::file_layout()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:1087:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(all_written_send_sizes,sizeof(int),nprocs_file,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function 'char* LAMMPS_NS::ReadRestart::read_string()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:1269:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(value,sizeof(char),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_int_vec(int, int*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:1281:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(vec,sizeof(int),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_double_vec(int, double*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/read_restart.cpp:1292:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(vec,sizeof(double),n,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_native.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_native.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_native.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_xyz.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_xyz.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reader_xyz.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_block.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_block.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_block.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cone.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cone.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cone.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cylinder.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cylinder.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_cylinder.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_intersect.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_intersect.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_intersect.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_plane.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_plane.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_plane.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_prism.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_prism.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_prism.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_sphere.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_union.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_union.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/region_union.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/replicate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/replicate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/replicate.cpp"
[ 42%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/rerun.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/rerun.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/rerun.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reset_ids.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reset_ids.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/reset_ids.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/respa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/respa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/respa.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/run.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/run.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/run.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/set.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/set.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/set.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/special.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/special.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/special.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/thermo.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/thermo.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/thermo.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/timer.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/timer.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/timer.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/update.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/update.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/update.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp: In constructor 'LAMMPS_NS::Universe::Universe(LAMMPS_NS::LAMMPS*, MPI_Comm)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp:273:15: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(ver,"%04d%02d%02d", year % 10000, month, day % 100);
^~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/ext/string_conversions.h:43,
from /usr/include/c++/8/bits/basic_string.h:6391,
from /usr/include/c++/8/string:52,
from /usr/include/c++/8/stdexcept:39,
from /usr/include/c++/8/array:39,
from /usr/include/c++/8/tuple:39,
from /usr/include/c++/8/bits/stl_map.h:63,
from /usr/include/c++/8/map:61,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42,
from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2684,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/universe.cpp:14:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 9 and 11 bytes into a destination of size 10
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/velocity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/velocity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/velocity.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/variable.cpp:681:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
fscanf(fp,"%d",&nextindex);
~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/verlet.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/verlet.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/verlet.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp"
[ 43%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_data.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_data.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_data.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_dump.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_dump.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_dump.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp: In member function 'void LAMMPS_NS::WriteCoeff::command(int, char**)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp:97:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(str,256,one); // coeff
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp:101:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(str,256,one);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_coeff.cpp:104:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(str,256,one);
~~~~~^~~~~~~~~~~~~
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_restart.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_restart.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/write_restart.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_temp_asphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/compute_temp_asphere.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nh_asphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nh_asphere.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nph_asphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nph_asphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nph_asphere.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_npt_asphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_npt_asphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_npt_asphere.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_line.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_line.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_line.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_tri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_tri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nve_tri.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nvt_asphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nvt_asphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/fix_nvt_asphere.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp"
[ 44%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_line_lj.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_line_lj.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_line_lj.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_tri_lj.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_tri_lj.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_tri_lj.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:467:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setwell[i],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:470:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&well[i][0],sizeof(double),3,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:474:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:478:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:479:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:480:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:512:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamma,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&upsilon,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:514:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mu,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:515:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:516:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_gayberne.cpp:517:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:445:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setwell[i],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:448:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&well[i][0],sizeof(double),3,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:452:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:456:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:457:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:458:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:486:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE/pair_resquared.cpp:487:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_nparticle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_nparticle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_nparticle.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polygon.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polygon.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polygon.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polyhedron.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polyhedron.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/body_rounded_polyhedron.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_body_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_body_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_body_local.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_temp_body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_temp_body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/compute_temp_body.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nh_body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nh_body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nh_body.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nph_body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nph_body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nph_body.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_npt_body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_npt_body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_npt_body.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nve_body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nve_body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nve_body.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nvt_body.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nvt_body.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_nvt_body.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polygon.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polygon.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polygon.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp"
[ 45%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_nparticle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_nparticle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_nparticle.cpp"
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_rounded_polygon.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_rounded_polygon.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_rounded_polygon.cpp"
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_rounded_polyhedron.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_rounded_polyhedron.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY/pair_body_rounded_polyhedron.cpp"
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp"
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp"
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:376:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:377:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:378:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k3[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:379:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k4[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:381:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb_k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:382:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:383:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:385:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:386:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:387:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/angle_class2.cpp:388:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp: In member function 'virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp:187:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp:188:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k2[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp:189:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k3[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/bond_class2.cpp:190:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k4[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp"
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp: In member function 'virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:843:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:844:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:845:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:847:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mbt_f1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:848:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mbt_f2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:849:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mbt_f3[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:850:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mbt_r0[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:852:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ebt_f1_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:853:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ebt_f2_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:854:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ebt_f3_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:855:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ebt_r0_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:857:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ebt_f1_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:858:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ebt_f2_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:859:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ebt_f3_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:860:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ebt_r0_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:862:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&at_f1_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:863:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&at_f2_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:864:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&at_f3_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:865:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&at_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:867:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&at_f1_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:868:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&at_f2_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:869:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&at_f3_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:870:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&at_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:872:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:873:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:874:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:876:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb13t_k[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:877:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb13t_r10[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/dihedral_class2.cpp:878:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp: In member function 'virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:609:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k0[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:610:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:612:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:613:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:614:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:615:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:616:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/improper_class2.cpp:617:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:310:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:314:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:315:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:345:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:346:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:347:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp"
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/fix_wall_colloid.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:364:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:368:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:369:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:401:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:402:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp.o
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:404:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:406:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:410:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:411:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:412:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:443:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:444:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:445:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:446:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:447:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:448:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian_poly.cpp"
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:610:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:614:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:615:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:650:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mu,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:651:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flaglog,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:652:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flagfld,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:653:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:654:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:655:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&t_target, sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:656:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed, sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:657:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:658:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:659:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flagHI,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_brownian.cpp:660:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flagVF,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:401:31: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:405:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a12[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:406:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:407:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:408:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:409:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:439:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:440:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_colloid.cpp:441:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:690:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:694:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:695:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:728:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mu,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:729:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flaglog,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:730:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flagfld,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:731:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:732:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:733:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:734:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:735:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flagHI,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate.cpp:736:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flagVF,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1917:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1921:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1922:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1954:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mu,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1955:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flaglog,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1956:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1957:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1958:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1959:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1960:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flagHI,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricateU.cpp:1961:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&flagVF,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_lubricate_poly.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_atom_gz.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_atom_gz.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_atom_gz.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_cfg_gz.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_cfg_gz.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_cfg_gz.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_custom_gz.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_custom_gz.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_custom_gz.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_xyz_gz.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_xyz_gz.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS/dump_xyz_gz.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/atom_vec_dipole.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/atom_vec_dipole.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/atom_vec_dipole.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" 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[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o
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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" 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-o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:441:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:445:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:446:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:447:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:448:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:479:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:480:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:351:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:355:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:356:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:357:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:386:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:387:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:388:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:389:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ewald_order,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:532:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_freeze.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_freeze.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_freeze.cpp"
[ 47%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_pour.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_pour.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_pour.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/fix_wall_gran_region.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald_disp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald_disp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/ewald_disp.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:540:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:566:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kn,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:567:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kt,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:568:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamman,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:569:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gammat,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:570:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&xmu,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:571:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dampflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d_wrap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d_wrap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fft3d_wrap.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/gridcomm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/gridcomm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/gridcomm.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm_cg.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm_cg.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/msm_cg.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::init()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:95:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(old_acc_str,"%g",old_acc);
^~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'void LAMMPS_NS::FixTuneKspace::store_old_kspace_settings()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:206:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(old_acc_str,"%g",old_acc);
^~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::pre_exchange()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:150:28: warning: '/long' directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=]
sprintf(new_pair_style,"%s/long",base_pair_style);
^~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 25 bytes into a destination of size 20
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:155:30: warning: '/msm' directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=]
sprintf(new_pair_style,"%s/msm",base_pair_style);
^~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 5 and 24 bytes into a destination of size 20
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:140:28: warning: '/msm' directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=]
sprintf(new_pair_style,"%s/msm",base_pair_style);
^~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 5 and 24 bytes into a destination of size 20
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:133:28: warning: '/long' directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=]
sprintf(new_pair_style,"%s/long",base_pair_style);
^~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 25 bytes into a destination of size 20
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:126:28: warning: '/long' directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=]
sprintf(new_pair_style,"%s/long",base_pair_style);
^~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 6 and 25 bytes into a destination of size 20
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp"
[ 48%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_msm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_msm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_msm.cpp"
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:427:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:431:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:432:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rho[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:433:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:434:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:435:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:436:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:470:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:471:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:472:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:473:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_born_coul_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:404:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:408:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:409:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rho[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:410:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:411:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:443:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:444:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:445:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:446:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:447:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:448:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp"
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:360:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:364:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck_a_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:365:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck_rho_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:366:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck_c_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:367:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_buck_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:399:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_buck_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:400:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:401:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:402:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:404:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ewald_order,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_msm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_msm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_msm.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:297:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:300:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&scale[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:329:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_coul_long.cpp:330:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp"
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_msm.cpp"
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp"
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:830:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:834:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:835:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:836:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&eps14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:837:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:869:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_inner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:870:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:871:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:872:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:873:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:874:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:875:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:904:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:905:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:906:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&eps14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:907:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:939:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_inner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:940:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:941:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:942:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:943:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:944:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:945:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:800:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:804:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:805:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:806:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:837:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:838:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:839:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:843:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp"
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp"
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp"
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeO,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeH,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeB,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeA,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:541:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&qdist,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:360:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:364:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:365:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:366:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_read[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:399:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:400:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:401:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:402:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ewald_order,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeO,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeH,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeB,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1552:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeA,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&qdist,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1559:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1560:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeO,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeH,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeB,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:479:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeA,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pair_tip4p_long.cpp:480:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&qdist,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_cg.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_cg.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_cg.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_disp_tip4p.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_stagger.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_stagger.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_stagger.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_tip4p.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_tip4p.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/pppm_tip4p.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap_wrap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap_wrap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE/remap_wrap.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/fix_qeq_comb.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/fix_qeq_comb.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo_morse.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:564:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:565:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:566:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:567:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:592:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:616:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::grab(FILE*, int, double*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_adp.cpp:928:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3385:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3391:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3393:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3397:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3399:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3401:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3403:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3407:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3409:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3411:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3413:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3415:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3417:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3419:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3421:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3423:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3425:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3429:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3431:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3433:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3435:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3437:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3439:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3441:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3443:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3445:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3447:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3449:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3451:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3453:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3455:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3457:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3459:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3461:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3463:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3465:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3467:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3469:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3471:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3473:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3475:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3477:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3482:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3484:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3486:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3488:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3490:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3492:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3494:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3496:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3498:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3502:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3506:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3508:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3510:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3512:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3514:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3516:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3518:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3520:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3522:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3527:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3529:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3531:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3533:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3535:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3537:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3539:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3541:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3543:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3550:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3551:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3552:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3556:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3560:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3563:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3566:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3570:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3573:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3580:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3581:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3582:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3584:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3588:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3592:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3596:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3603:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3604:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3605:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3607:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3612:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3616:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3621:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3629:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3630:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3631:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3632:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3637:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3641:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3646:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3654:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3655:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3656:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3658:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3663:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3667:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3673:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3682:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3683:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3684:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3686:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3691:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3695:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3701:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3710:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3711:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3712:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3714:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3719:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3723:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3729:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3738:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3739:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3740:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3742:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3747:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3751:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_airebo.cpp:3757:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp"
[ 50%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp: In member function 'void LAMMPS_NS::PairBOP::read_table(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:4982:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); // skip first comment line
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:4983:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:4988:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5017:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5085:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); // skip first comment line
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5087:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5089:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5093:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5098:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5102:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5104:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5106:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5115:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5122:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5126:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5130:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5132:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5136:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5138:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5142:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5144:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5148:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5150:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5154:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5156:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5160:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5162:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5164:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5173:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5180:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5188:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5196:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5204:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5211:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5215:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_bop.cpp:5232:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::read_lib()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:330:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:331:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:342:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:354:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:362:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:370:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:379:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:388:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:395:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:408:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:426:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:435:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:450:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:468:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:477:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:492:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:510:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_comb3.cpp:519:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLIB,fp);
~~~~~^~~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'virtual void LAMMPS_NS::PairEAM::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp:470:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp:471:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp:473:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam.cpp:788:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp"
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_cd.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:143:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:168:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:192:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp"
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp"
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFS::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:143:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:168:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eam_fs.cpp:194:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_gw_zbl.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp: In member function 'int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp:971:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_eim.cpp:975:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp"
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp"
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp: In member function 'void LAMMPS_NS::PairLCBOP::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:988:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:994:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:995:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:996:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&gamma_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:997:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&A);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:998:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:999:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_2);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1000:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&alpha);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1001:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1002:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_2);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1003:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&d);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1004:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1005:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_4);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1006:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_6);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1007:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&L);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1008:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&kappa);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1009:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_0);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1010:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1011:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_0);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1012:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1_LR);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1013:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2_LR);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1014:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1015:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_2);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1016:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1017:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_2);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1018:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_1);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1019:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_2);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1020:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1021:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp); sscanf(s,"%lg",&delta);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1024:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1033:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1040:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
while (1) { fgets(s,MAXLINE,fp); if (s[0] != '#') break; }
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1047:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_lcbop.cpp:1053:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(s,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_rebo.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_rebo.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_rebo.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:580:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:581:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
while (line == strchr(line,'#')) fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:597:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:615:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:651:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function 'void LAMMPS_NS::PairPolymorphic::grab(FILE*, int, double*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_polymorphic.cpp:882:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_sw.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_sw.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_sw.cpp"
[ 51%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod_c.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod_c.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_mod_c.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_zbl.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_zbl.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_tersoff_zbl.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta_table.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta_table.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY/pair_vashishta_table.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_atom_swap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_atom_swap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_atom_swap.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_break.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_break.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_break.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_create.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_create.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_create.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_swap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_swap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_bond_swap.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_gcmc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_gcmc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_gcmc.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_tfmc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_tfmc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/fix_tfmc.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM/pair_meam.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM/pair_meam.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM/pair_meam.cpp"
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_msd_nongauss.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_msd_nongauss.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_msd_nongauss.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:350:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:354:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:355:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:383:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:384:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&max_cell_size,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:385:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:386:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC/pair_dsmc.cpp:387:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 52%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_ti.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_ti.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/compute_ti.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/dump_xtc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/dump_xtc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/dump_xtc.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_deposit.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_deposit.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_deposit.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_efield.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_efield.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_efield.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_evaporate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_evaporate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_evaporate.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_gld.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_gld.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_gld.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_oneway.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_oneway.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_oneway.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_bcc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_bcc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_bcc.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_fcc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_fcc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_orient_fcc.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_thermal_conductivity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_thermal_conductivity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_thermal_conductivity.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_ttm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_ttm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_ttm.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_viscosity.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_viscosity.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/fix_viscosity.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp"
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:331:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:335:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&e0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:336:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:337:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nn[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:338:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mm[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:339:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:369:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:370:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut.cpp:372:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 53%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:382:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&e0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nn[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mm[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:390:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:391:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:423:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:425:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:426:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:427:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/xdr_compat.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/xdr_compat.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/xdr_compat.cpp"
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp"
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:429:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:433:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&e0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:434:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:435:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nn[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:436:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mm[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:437:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:470:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:471:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:472:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:473:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_delta.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp: In member function 'virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp:249:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp:250:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp:251:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k_ub[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_charmm.cpp:252:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r_ub[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp: In member function 'virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine.cpp:197:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp"
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp"
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp: In member function 'virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:250:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:251:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b[1],sizeof(int),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:252:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:219:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp: In member function 'virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp:219:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_harmonic.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_angle.cpp"
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_bond.cpp"
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_full.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_full.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_full.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp: In member function 'virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:292:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabstyle,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:293:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tablength,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp: In member function 'void LAMMPS_NS::AngleTable::read_table(LAMMPS_NS::AngleTable::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:385:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:387:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:388:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:394:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:403:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/angle_table.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_molecular.cpp"
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_template.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_template.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/atom_vec_template.cpp"
[ 54%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp"
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp: In member function 'virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp:221:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp:222:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene.cpp:223:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp"
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp: In member function 'virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:229:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:230:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:231:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:232:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_fene_expand.cpp:233:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shift[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp"
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp: In member function 'virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_gromos.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_harmonic.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp"
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp: In member function 'virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp:176:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp:177:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_morse.cpp:178:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp: In member function 'virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp:171:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_nonlinear.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lamda[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp"
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp: In member function 'virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:282:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b1[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:283:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b2[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:284:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rc[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_quartic.cpp:285:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&u0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'virtual void LAMMPS_NS::BondTable::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabstyle,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tablength,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'void LAMMPS_NS::BondTable::read_table(LAMMPS_NS::BondTable::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:314:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:316:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:317:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:323:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/bond_table.cpp:335:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:429:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:430:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:431:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:432:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmm.cpp:433:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&weightflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:472:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:473:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&weightflag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp"
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp"
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/fix_cmap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/fix_cmap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/fix_cmap.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp: In member function 'virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_helix.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a3[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:323:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a4[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp: In member function 'virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/dihedral_opls.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp:340:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sign[1],sizeof(int),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_cvff.cpp:341:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_harmonic.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp: In member function 'virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kw[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&w0[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/improper_umbrella.cpp:323:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&C[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_hbond_dreiding_morse.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:379:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:383:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:384:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:385:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&eps14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:440:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_inner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:441:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:442:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_inner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:443:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:444:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:445:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/atom_vec_peri.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" 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-o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/atom_vec_peri.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/atom_vec_peri.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&eps14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_inner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:621:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:625:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:626:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:627:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:663:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeO,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:664:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeH,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:665:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeB,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:666:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeA,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:667:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&qdist,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:669:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:670:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:671:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:672:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:673:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:480:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:507:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeO,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:508:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeH,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:509:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeB,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:510:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeA,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:511:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&qdist,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_damage_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_damage_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_damage_atom.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_dilatation_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_dilatation_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_dilatation_atom.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_plasticity_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_plasticity_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/compute_plasticity_atom.cpp"
[ 56%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/fix_peri_neigh.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/fix_peri_neigh.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/fix_peri_neigh.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:570:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:574:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bulkmodulus[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:575:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shearmodulus[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:576:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&s00[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:577:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:578:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_eps.cpp:579:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&m_yieldstress[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp: In member function 'virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:424:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:428:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kspring[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:429:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&s00[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:430:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_pmb.cpp:431:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bulkmodulus[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shearmodulus[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&s00[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:502:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_lps.cpp:503:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/compute_event_displace.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/compute_event_displace.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/compute_event_displace.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_prd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_prd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_prd.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp: In member function 'virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:552:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:556:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bulkmodulus[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:557:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shearmodulus[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:558:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&s00[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:559:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:560:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:561:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&m_lambdai[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI/pair_peri_ves.cpp:562:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&m_taubi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_tad.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_tad.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_event_tad.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_neb.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_neb.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/fix_neb.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/neb.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/neb.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/neb.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/prd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/prd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/prd.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/tad.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/tad.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/tad.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/temper.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/temper.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/temper.cpp"
[ 57%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/verlet_split.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/verlet_split.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA/verlet_split.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_erotate_rigid.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_ke_rigid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_ke_rigid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_ke_rigid.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_rigid_local.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_rigid_local.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/compute_rigid_local.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_ehex.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_ehex.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_ehex.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rattle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rattle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rattle.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh_small.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh_small.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nh_small.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph_small.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph_small.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nph_small.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt_small.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt_small.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_npt_small.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve.cpp"
[ 58%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve_small.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve_small.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nve_small.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt_small.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt_small.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_nvt_small.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_shake.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_shake.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_shake.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_append_atoms.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_append_atoms.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_append_atoms.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_msst.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_msst.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_msst.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_nphug.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_nphug.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_nphug.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_wall_piston.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_wall_piston.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK/fix_wall_piston.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp: In member function 'virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp:2604:19: warning: '%s' directive writing up to 127 bytes into a region of size 93 [-Wformat-overflow=]
sprintf(str,"Cannot open fix rigid restart file %s",outfile);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID/fix_rigid_small.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 36 and 163 bytes into a destination of size 128
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_sna_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_sna_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_sna_atom.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snad_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snad_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snad_atom.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snav_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snav_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/compute_snav_atom.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/pair_snap.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/pair_snap.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/pair_snap.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/sna.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/sna.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP/sna.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_srd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_srd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_srd.cpp"
[ 59%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_wall_srd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_wall_srd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD/fix_wall_srd.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_invoke.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_invoke.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_invoke.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_move.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_move.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/fix_python_move.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/pair_python.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/pair_python.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/pair_python.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/python_impl.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/python_impl.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON/python_impl.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_atom_mpiio.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_atom_mpiio.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_atom_mpiio.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_cfg_mpiio.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_custom_mpiio.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/restart_mpiio.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/restart_mpiio.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO/restart_mpiio.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI/compute_voronoi_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI/compute_voronoi_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI/compute_voronoi_atom.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS/fix_poems.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS/fix_poems.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS/fix_poems.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC/fix_atc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC/fix_atc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC/fix_atc.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp"
[ 60%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/fix_nve_awpmd.cpp"
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp"
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/compute_pressure_bocs.cpp"
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/fix_bocs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/fix_bocs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS/fix_bocs.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:604:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:607:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:631:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:632:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:633:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp"
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:35:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt<double, 3>&}; _Tp = Vector_Nt<double, 3>; _Alloc = std::allocator<Vector_Nt<double, 3> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Vector_Nt<double, 3> >::iterator' {aka '__gnu_cxx::__normal_iterator<Vector_Nt<double, 3>*, std::vector<Vector_Nt<double, 3> > >'} changed in GCC 7.1
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp"
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:35:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::compute(int, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Vector_Nt<double, 3>*, std::vector<Vector_Nt<double, 3> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp"
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp"
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp: In member function 'virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:296:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:297:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&Delta[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:298:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp"
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:838:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:843:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k_cxst[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:844:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:845:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:846:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:847:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:848:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_lc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:849:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_hc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:850:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:851:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:853:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:854:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_cxst1_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:855:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:856:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:857:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:859:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:860:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_cxst4_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:861:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:862:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:863:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:865:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst5[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:866:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_cxst5_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:867:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:868:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst5[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:869:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:871:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst6[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:872:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_cxst6_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:873:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:874:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst6[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:875:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:877:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&AA_cxst1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:878:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&BB_cxst1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:942:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:943:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:944:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kappa_dh[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&qeff_dh_pf[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_dh[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_dh_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:467:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_dh_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp"
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp"
[ 61%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:991:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:996:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k_cxst[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:997:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:998:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:999:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1000:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1001:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_lc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1002:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_cxst_hc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1003:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1004:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1006:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1007:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_cxst1_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1008:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1009:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1010:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1012:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1013:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_cxst4_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1014:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1015:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1016:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1018:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst5[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1019:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_cxst5_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1020:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1021:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst5[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1022:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1024:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst6[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1025:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_cxst6_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1026:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1027:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst6[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1028:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1030:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst3p[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1031:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cosphi_cxst3p_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1032:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst3p[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1033:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cosphi_cxst3p_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1034:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_cxst4p[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1035:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cosphi_cxst4p_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1036:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_cxst4p[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1037:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cosphi_cxst4p_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1107:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1108:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1109:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:718:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:723:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon_ss[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:724:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma_ss[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:725:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_ss_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:726:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_ss[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:727:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_ss_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:728:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon_sb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:729:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma_sb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:730:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_sb_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:731:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_sb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:732:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_sb_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:733:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon_bb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:734:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma_bb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:735:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_bb_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:736:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_bb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:737:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_bb_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:780:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:781:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:782:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:978:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:983:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon_hb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:984:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_hb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:985:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_hb_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:986:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_hb_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:987:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_hb_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:988:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_hb_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:989:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_hb_lc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:990:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_hb_hc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:991:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_hb_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:992:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_hb_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:993:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shift_hb[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:995:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_hb1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:996:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_hb1_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:997:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb1_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:998:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_hb1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:999:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb1_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1001:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_hb2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1002:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_hb2_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1003:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb2_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1004:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_hb2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1005:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb2_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1007:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_hb3[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1008:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_hb3_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1009:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb3_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1010:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_hb3[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1011:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb3_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1013:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_hb4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1014:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_hb4_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1015:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb4_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1016:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_hb4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1017:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb4_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1019:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_hb7[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1020:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_hb7_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1021:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb7_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1022:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_hb7[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1023:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb7_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1025:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_hb8[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1026:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_hb8_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1027:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb8_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1028:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_hb8[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1029:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_hb8_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1104:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1105:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1106:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:996:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon_st[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_st[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_st_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_st_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_st_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_st_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_st_lc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_st_hc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_st_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_st_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1011:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shift_st[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_st4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_st4_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_st4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1017:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_st4_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_st5[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_st5_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_st5[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1023:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_st5_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_st6[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_st6_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_st6[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1029:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_st6_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_st1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_st1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cosphi_st1_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_st2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_st2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1038:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cosphi_st2_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1106:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_edpd.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:950:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:955:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k_xst[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:956:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_xst_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:957:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_xst_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:958:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_xst_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:959:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_xst_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:960:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_xst_lc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:961:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_xst_hc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:962:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_xst_lo[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:963:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_xst_hi[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:965:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_xst1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:966:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_xst1_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:967:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst1_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:968:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_xst1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:969:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst1_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:971:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_xst2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:972:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_xst2_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:973:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst2_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:974:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_xst2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:975:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst2_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:977:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_xst3[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:978:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_xst3_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:979:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst3_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:980:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_xst3[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:981:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst3_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:983:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_xst4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:984:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_xst4_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:985:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst4_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:986:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_xst4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:987:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst4_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:989:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_xst7[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:990:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_xst7_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:991:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst7_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:992:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_xst7[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:993:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst7_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:995:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a_xst8[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:996:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta_xst8_0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:997:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst8_ast[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:998:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&b_xst8[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:999:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dtheta_xst8_c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1072:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1073:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1074:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp"
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_edpd_temp_atom.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_edpd_source.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_dpd.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_edpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_edpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_edpd.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_mvv_tdpd.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ 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-I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/fix_tdpd_source.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp"
[ 62%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:462:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:463:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:464:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&power[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:465:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:466:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kappa[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:467:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&powerT[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:468:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cutT[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:471:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sc[i][j][k],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:475:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kc[i][j][k],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:514:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_edpd.cpp:515:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:353:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:357:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&A_att[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:358:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&B_rep[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:359:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:360:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_r[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:391:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&temperature,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:392:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_mdpd.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:401:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:405:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:406:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:407:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&power[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:408:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:409:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cutcc[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:411:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kappa[i][j][k],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:412:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j][k],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:413:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&powercc[i][j][k],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&temperature,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:450:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:451:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO/pair_tdpd.cpp:452:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:384:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lj_type[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:390:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:391:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:421:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:422:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:423:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp: In member function 'virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/angle_sdk.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&repscale[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:475:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:479:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lj_type[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:480:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:481:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:482:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:514:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:515:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:516:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:517:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:518:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:519:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:520:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/atom_vec_dpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/atom_vec_dpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/atom_vec_dpd.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/compute_dpd_atom.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::invoke_vector(LAMMPS_NS::bigint)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:432:21: warning: '%s' directive writing up to 127 bytes into a region of size 98 [-Wformat-overflow=]
sprintf(str,"Cannot open fix saed/vtk file %s",nName);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 31 and 158 bytes into a destination of size 128
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::options(int, char**)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:559:23: warning: '%s' directive writing up to 127 bytes into a region of size 98 [-Wformat-overflow=]
sprintf(str,"Cannot open fix saed/vtk file %s",nName);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23,
from /<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 31 and 158 bytes into a destination of size 128
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_dpd_energy.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_cv.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_cv.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_cv.cpp"
[ 63%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_rx.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_rx.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_rx.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp: In member function 'void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:216:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:218:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:219:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:225:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table.cpp:237:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_shardlow.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_shardlow.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_shardlow.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp: In member function 'void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:435:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:437:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:438:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:444:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:472:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:474:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nbin_ssa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nbin_ssa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nbin_ssa.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:382:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&temperature,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:420:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:483:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:487:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:488:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:489:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kappa[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:490:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:520:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:521:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&seed,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:522:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:366:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:368:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:369:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:375:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:388:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:390:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:709:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabstyle,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:710:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tablength,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:974:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:978:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1004:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1005:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1006:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1007:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_table_rx.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_table_rx.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_table_rx.cpp"
[ 64%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:511:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:513:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:514:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:520:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:533:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:535:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:854:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabstyle,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:855:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tablength,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&polar[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:502:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&thole[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:504:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:540:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:541:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:542:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&thole_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:543:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:544:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:545:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:546:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:547:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:548:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/atom_vec_electron.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_atom_eff.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_ke_eff.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:316:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&polar[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&thole[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:322:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:352:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&thole_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:353:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:354:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE/pair_thole.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_eff.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/compute_temp_region_eff.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_langevin_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_langevin_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_langevin_eff.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nh_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nh_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nh_eff.cpp"
[ 65%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nph_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nph_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nph_eff.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_npt_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_npt_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_npt_eff.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nve_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nve_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nve_eff.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_eff.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_sllod_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_sllod_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_nvt_sllod_eff.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_temp_rescale_eff.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_temp_rescale_eff.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/fix_temp_rescale_eff.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/compute_fep.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/compute_fep.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/compute_fep.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/fix_adapt_fep.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/fix_adapt_fep.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/fix_adapt_fep.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:970:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:973:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:997:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:998:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF/pair_eff_cut.cpp:999:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:277:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:281:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lambda[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:282:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:311:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nlambda,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:312:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphac,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:314:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:315:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:316:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:301:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:305:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lambda[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nlambda,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphac,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:843:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:847:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:848:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:849:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lambda[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:850:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&eps14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:851:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma14[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:886:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nlambda,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:887:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphalj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:888:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphac,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:890:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_inner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:891:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:892:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:893:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:894:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:381:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lambda[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nlambda,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphalj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:426:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphac,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:432:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp"
[ 66%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:799:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:805:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lambda[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:806:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nlambda,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphalj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphac,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:847:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:848:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lambda[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nlambda,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alphalj,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeO,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:526:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeH,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:527:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeB,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:528:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeA,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&qdist,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:531:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:532:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:533:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:534:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:535:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:317:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:322:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:323:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:324:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&lambda[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_morse_soft.cpp:325:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD/dump_h5md.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD/dump_h5md.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD/dump_h5md.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_fluid.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_momentum.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:462:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeO,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:463:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeH,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:464:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeB,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:465:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&typeA,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:466:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&qdist,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_pc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_pc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_pc.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_rigid_pc_sphere.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_viscous.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_viscous.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB/fix_lb_viscous.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_manifoldforce.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_manifoldforce.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_manifoldforce.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_cylinder_dent.cpp"
[ 67%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_dumbbell.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_dumbbell.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_dumbbell.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_ellipsoid.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_factory.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_factory.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_factory.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_gaussian_bump.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_plane_wiggle.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_spine.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_spine.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_spine.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_final.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function 'virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp:62:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector<LAMMPS_NS::user_manifold::thyla_part*>::size_type' {aka 'unsigned int'} [-Wformat=]
fprintf(screen,"I have %ld parts. They are:\n", parts.size());
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_dens_init.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_force.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_force.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_force.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_funcs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_funcs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_funcs.cpp"
[ 68%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_impl.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_impl.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_impl.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_done.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_done.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_done.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_global.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_global.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_global.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_param.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_param.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/meam_setup_param.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC/pair_meamc.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_linalg.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:187:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:246:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:306:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:329:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:331:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:343:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:345:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:358:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In function 'void getparmindata(const char*, int*, double*, double*, double*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:109:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:123:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,sizeof(line),in);
~~~~~^~~~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT/pair_mgpt.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:228:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:229:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kcost[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:230:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ksint[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:231:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:260:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&umin[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:261:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:262:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cost[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:263:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sint[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:264:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp"
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp: In member function 'virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp:209:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_dipole.cpp:210:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&gamma0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp: In member function 'virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp:235:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&C0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&C1[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier.cpp:238:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&C2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp: In member function 'virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:241:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:242:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&C[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:243:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&N[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp: In member function 'virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k3[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp:238:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k4[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/angle_quartic.cpp:239:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_ackland_atom.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:181:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:182:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r1[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:185:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r1[1],sizeof(double),atom->nbondtypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_basal_atom.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_cnp_atom.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_entropy_atom.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_pressure_grem.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_temp_rotate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_temp_rotate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/compute_temp_rotate.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cost[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sint[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp"
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp: In member function 'virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp:386:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(k[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp:387:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(multiplicity[i],sizeof(int),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_fourier.cpp:388:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(shift[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:332:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(a[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp: In member function 'virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp: In member function 'virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:759:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:779:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(Ccoeff[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:780:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(phi_mult[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:781:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(phi_shift[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:782:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(phi_offset[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:783:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(theta1_mult[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:784:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(theta1_shift[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:785:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(theta1_offset[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:786:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(theta2_mult[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:787:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(theta2_shift[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_spherical.cpp:788:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(theta2_offset[i],sizeof(double),nterms[i],fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_addtorque.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_addtorque.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_addtorque.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function 'virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1026:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabstyle,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1027:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tablength,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function 'void LAMMPS_NS::DihedralTable::read_table(LAMMPS_NS::DihedralTable::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1094:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1096:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1098:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table.cpp:1104:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function 'virtual void LAMMPS_NS::DihedralTableCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1064:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabstyle,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1065:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tablength,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1066:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1067:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1068:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1069:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1070:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1071:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1073:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1074:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1075:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function 'void LAMMPS_NS::DihedralTableCut::read_table(LAMMPS_NS::DihedralTableCut::Table*, char*, char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1154:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp); // no match, skip section
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1156:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1158:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1164:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~~
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_bond_react.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_bond_react.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_bond_react.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp:506:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
if (fileend > 0) ftruncate(fileno(fp),fileend);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_filter_corotate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_filter_corotate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_filter_corotate.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_flow_gauss.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_flow_gauss.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_flow_gauss.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_gle.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_gle.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_gle.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_grem.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_grem.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_grem.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_imd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_imd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_imd.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ipi.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ipi.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ipi.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_nvk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_nvk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_nvk.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_pimd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_pimd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_pimd.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_rhok.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_rhok.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_rhok.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_smd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_smd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_smd.cpp"
[ 71%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_srp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_srp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_srp.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ti_spring.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ti_spring.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ti_spring.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_ees.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp: In constructor 'LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:123:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:124:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:128:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:129:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:133:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:134:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:138:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:139:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:143:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:144:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:148:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:149:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:153:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:154:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:158:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:159:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:163:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:164:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:168:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:169:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:173:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:174:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:178:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:179:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:183:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:184:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:188:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:189:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:193:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:194:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:198:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:199:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:203:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:204:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:208:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:209:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:213:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:214:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:218:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:219:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:224:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:228:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:229:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(linee,MAXLINE,fpr_2);
~~~~~^~~~~~~~~~~~~~~~~~~~~
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp: In member function 'virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp:307:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_cossq.cpp:308:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp:253:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_distance.cpp:254:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_agni.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_agni.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_agni.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp: In member function 'virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&C0[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&C1[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&C2[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_fourier.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&all[1],sizeof(int),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp: In member function 'virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/improper_ring.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:345:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:349:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:350:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rho[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:351:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:352:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:381:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:382:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:383:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:384:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip.cpp"
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_edip_multi.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rme[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigmae[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:317:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:318:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_diel.cpp:319:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:305:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigmae[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:306:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_coul_shield.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 72%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_extep.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_extep.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_extep.cpp"
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:309:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:313:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&hgauss[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:314:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rmh[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:315:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigmah[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:345:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:346:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:347:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp"
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp"
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_z.cpp"
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp"
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_list.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_list.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_list.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&aparm[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bparm[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp"
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp"
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:835:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:839:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:840:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:841:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&shift[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:842:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:874:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:875:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:876:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:877:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:878:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:879:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ncoultablebits,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:880:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tabinner,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_inner[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:490:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:494:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&epsilon[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:495:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sigma[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:496:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:497:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:498:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&scale[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:527:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:528:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::read_file(const char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:449:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:455:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:485:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*, bool)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:649:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:652:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:658:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:665:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_spline.cpp:669:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp"
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:475:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:607:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:613:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:619:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:623:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
[ 73%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:312:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:317:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&c[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&rr[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:353:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:354:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&sscale,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&dscale,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:356:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_momb.cpp:357:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:275:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:279:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&d0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:280:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:281:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&r0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:309:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:310:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_tersoff_table.cpp"
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_grem.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_grem.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_grem.cpp"
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_npt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_npt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/temper_npt.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:702:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:707:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&a0[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:708:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:736:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:737:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bptype,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:738:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&btype,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:739:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&min,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:740:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&midpoint,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC/pair_srp.cpp:741:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&exclude,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp"
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp"
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2P6::write_data(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:432:16: warning: too many arguments for format [-Wformat-extra-args]
fprintf(fp,"%d %g %g %g %g\n",
^~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:389:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:390:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:391:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k3[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:392:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k4[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k5[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k6[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb_k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:400:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:401:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:402:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::write_data(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:356:16: warning: format '%d' expects argument of type 'int', but argument 6 has type 'double' [-Wformat=]
fprintf(fp,"%d %g %d %d\n",i,k[i],multiplicity[i],th0[i]);
^~~~~~~~~~~~~~~ ~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&k[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&th0[1],sizeof(double),atom->nangletypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&kw[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&w0[1],sizeof(double),atom->nimpropertypes,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/dump_molfile.cpp"
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/molfile_interface.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:420:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:424:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck6d1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:425:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck6d2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:426:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck6d3[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:427:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck6d4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:428:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha_ij[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:429:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:462:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&vdwl_smooth,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:463:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:464:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:465:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:466:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:467:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:453:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:457:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck6d1[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:458:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck6d2[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:459:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck6d3[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:460:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&buck6d4[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:461:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&alpha_ij[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:462:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj[i][j],sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart_settings(FILE*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:496:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&vdwl_smooth,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:497:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&coul_smooth,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:498:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_lj_global,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:499:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&cut_coul,sizeof(double),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:500:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&offset_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:501:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&mix_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread(&tail_flag,sizeof(int),1,fp);
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE/reader_molfile.cpp"
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf.cpp"
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF/dump_netcdf_mpiio.cpp"
[ 74%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON/fix_phonon.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON/fix_phonon.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON/fix_phonon.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qbmsst.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qbmsst.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qbmsst.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qtb.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qtb.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB/fix_qtb.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/atom_vec_smd.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/atom_vec_smd.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/atom_vec_smd.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_damage.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_damage.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_damage.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_hourglass_error.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_internal_energy.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_internal_energy.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_internal_energy.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_plastic_strain_rate.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_rho.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_rho.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_rho.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_defgrad.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_defgrad.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_defgrad.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_dt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_dt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_dt.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_num_neighs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_num_neighs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_num_neighs.cpp"
[ 75%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_shape.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_shape.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_shape.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain_rate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain_rate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_strain_rate.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_stress.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_stress.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_tlsph_stress.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_triangle_mesh_vertices.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_triangle_mesh_vertices.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_triangle_mesh_vertices.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_effm.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_effm.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_effm.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_num_neighs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_num_neighs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_num_neighs.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain_rate.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain_rate.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_strain_rate.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_stress.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_stress.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_ulsph_stress.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_vol.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_vol.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/compute_smd_vol.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_adjust_dt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_adjust_dt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_adjust_dt.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_tlsph.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_tlsph.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_tlsph.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_ulsph.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_ulsph.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_integrate_ulsph.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_move_triangulated_surface.cpp"
[ 76%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_setvel.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_setvel.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_setvel.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_wall_surface.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_hertz.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_hertz.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_hertz.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp: In member function 'virtual void LAMMPS_NS::FixSMD_TLSPH_ReferenceConfiguration::pre_exchange()':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp:152:32: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'LAMMPS_NS::bigint' {aka 'long long int'} [-Wformat=]
printf("**** updating ref config at step: %ld\n", update->ntimestep);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/pair_smd_ulsph.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/smd_material_models.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/smd_material_models.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD/smd_material_models.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:420:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(ptr,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:423:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(ptr,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:476:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr);
~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:480:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:488:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:497:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:515:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:529:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:552:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr);
~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:555:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:608:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:620:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:642:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:655:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:662:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:682:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(ptr,MAXLINE,fp);
~~~~~^~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:685:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:695:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:706:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:709:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:714:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:722:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:725:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:732:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:735:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:745:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:748:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:753:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:779:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:782:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:790:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:800:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets( ptr, MAXLINE, fp);
~~~~~^~~~~~~~~~~~~~~~~~~
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/atom_vec_meso.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_e_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_e_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_e_atom.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_rho_atom.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/compute_meso_t_atom.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso.cpp"
[ 77%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso_stationary.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso_stationary.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/fix_meso_stationary.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_lj.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_lj.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_lj.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_rhosum.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_rhosum.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_rhosum.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_force_tally.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_force_tally.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_force_tally.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_heat_flux_tally.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_heat_flux_tally.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_heat_flux_tally.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_mol_tally.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_mol_tally.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_mol_tally.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_tally.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_tally.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_pe_tally.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_stress_tally.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_stress_tally.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY/compute_stress_tally.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_pressure_uef.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_pressure_uef.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_pressure_uef.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_temp_uef.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_temp_uef.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/compute_temp_uef.cpp"
[ 78%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/dump_cfg_uef.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/dump_cfg_uef.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/dump_cfg_uef.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nh_uef.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nh_uef.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nh_uef.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_npt_uef.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_npt_uef.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_npt_uef.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nvt_uef.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nvt_uef.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/fix_nvt_uef.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/uef_utils.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/uef_utils.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF/uef_utils.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK/dump_vtk.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK/dump_vtk.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK/dump_vtk.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/compute_temp_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/compute_temp_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/compute_temp_cs.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_dsf_cs.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_wolf_cs.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_wolf_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_wolf_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_wolf_cs.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_long_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_long_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_born_coul_long_cs.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_buck_coul_long_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_buck_coul_long_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_buck_coul_long_cs.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_long_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_long_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_coul_long_cs.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq.cpp"
[ 79%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_dynamic.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_dynamic.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_dynamic.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_fire.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_fire.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_fire.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_point.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_point.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_point.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_shielded.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_shielded.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_shielded.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_slater.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_slater.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ/fix_qeq_slater.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_data.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_data.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_data.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/thr_omp.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_omp.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_sphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_sphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_sphere_omp.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_class2_omp.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_charmm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_charmm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_charmm_omp.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_omp.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_delta_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_delta_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_delta_omp.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_periodic_omp.cpp"
[ 80%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_squared_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_squared_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_squared_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_harmonic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_harmonic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_harmonic_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_table_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_table_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_table_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_sdk_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_sdk_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_sdk_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_cosine_shift_exp_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_dipole_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_dipole_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_dipole_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_fourier_simple_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_quartic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_quartic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/angle_quartic_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_class2_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_class2_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_class2_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_expand_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_expand_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_fene_expand_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_gromos_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_gromos_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_gromos_omp.cpp"
[ 81%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_morse_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_morse_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_morse_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_nonlinear_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_nonlinear_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_nonlinear_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_quartic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_quartic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_quartic_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_table_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_table_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_table_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_class2_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_class2_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_class2_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_charmm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_charmm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_charmm_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_harmonic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_harmonic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_harmonic_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_helix_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_helix_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_helix_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_multi_harmonic_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_opls_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_opls_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_opls_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp"
[ 82%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_fourier_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_fourier_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_fourier_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_nharmonic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_nharmonic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_nharmonic_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_quadratic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_quadratic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_quadratic_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_table_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_table_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/dihedral_table_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_gravity_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_gravity_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_gravity_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_sphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_sphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_sphere_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_sphere_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nve_sphere_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sllod_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sllod_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sllod_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_sphere_omp.cpp"
[ 83%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_asphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_asphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nph_asphere_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_asphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_asphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_npt_asphere_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_asphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_asphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nvt_asphere_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_wall_gran_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_wall_gran_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_wall_gran_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_qeq_comb_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_qeq_comb_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_qeq_comb_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_peri_neigh_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_peri_neigh_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_peri_neigh_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nph_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nph_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nph_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_npt_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_npt_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_npt_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nve_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nve_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nve_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nvt_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nvt_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nvt_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_small_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_small_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_small_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nphug_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nphug_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nphug_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_class2_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_class2_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_class2_omp.cpp"
[ 84%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cvff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cvff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cvff_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_harmonic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_harmonic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_harmonic_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_umbrella_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cossq_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cossq_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_cossq_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_fourier_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_fourier_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_fourier_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_ring_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_ring_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/improper_ring_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/respa_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/respa_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/respa_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/ewald_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/ewald_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/ewald_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_cg_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_cg_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/msm_cg_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_cg_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_cg_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_cg_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp"
[ 85%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_atomonly_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_bin_ghost_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_multi_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_multi_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_multi_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_full_nsq_ghost_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newtoff_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp"
[ 86%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_nsq_newton_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newtoff_omp.cpp"
[ 87%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newton_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newton_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/npair_halffull_newton_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_beck_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_beck_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_beck_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_wolf_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_cut_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_debye_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_debye_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_debye_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_dsf_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_dsf_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_dsf_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_wolf_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_wolf_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_wolf_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_tstat_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_tstat_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_dpd_tstat_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj96_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj96_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj96_cut_omp.cpp"
[ 88%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cubic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cubic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cubic_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_expand_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_expand_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_expand_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_smooth_linear_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_soft_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_table_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_table_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_table_omp.cpp"
[ 89%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_ufm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_ufm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_ufm_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_zbl_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_zbl_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_zbl_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gayberne_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gayberne_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gayberne_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_resquared_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_resquared_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_resquared_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_brownian_poly_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_colloid_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_colloid_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_colloid_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_poly_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_poly_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lubricate_poly_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_yukawa_colloid_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp"
[ 90%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hertz_history_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gran_hooke_history_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_long_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_msm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_msm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_born_coul_msm_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_long_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_coul_msm_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_buck_long_coul_long_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_msm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_msm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_msm_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp"
[ 91%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_coul_long_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_adp_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_adp_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_adp_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_airebo_morse_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_comb_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_comb_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_comb_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp"
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:139:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:167:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:187:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)':
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:139:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:167:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:189:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fgets(line,MAXLINE,fptr);
~~~~~^~~~~~~~~~~~~~~~~~~
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_eim_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nb3b_harmonic_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nb3b_harmonic_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nb3b_harmonic_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_rebo_omp.cpp"
[ 92%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_sw_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_mod_c_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_zbl_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_table_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_table_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_vashishta_table_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp"
[ 93%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_cut_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_lps_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_lps_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_lps_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_pmb_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_pmb_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_peri_pmb_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_cut_soft_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_long_soft_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_soft_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp"
[ 94%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tip4p_long_soft_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_agni_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_agni_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_agni_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_diel_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_diel_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_coul_diel_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_edip_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_edip_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_edip_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_cut_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_cut_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_gauss_cut_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_meam_spline_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_morse_smooth_linear_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/pair_tersoff_table_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_nh_asphere_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nh_omp.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nh_omp.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP/fix_rigid_nh_omp.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_opt.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_morse_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_morse_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_morse_opt.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_ufm_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_ufm_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_ufm_opt.cpp"
[ 95%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_charmm_coul_long_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_charmm_coul_long_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_charmm_coul_long_opt.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_coul_long_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_coul_long_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_coul_long_opt.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_cut_tip4p_long_opt.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_long_coul_long_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_long_coul_long_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_lj_long_coul_long_opt.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_opt.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_alloy_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_alloy_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_alloy_opt.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_fs_opt.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_fs_opt.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT/pair_eam_fs_opt.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/fix_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/fix_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/fix_gpu.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pppm_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pppm_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pppm_gpu.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_beck_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_beck_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_beck_gpu.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_gpu.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_gpu.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_coul_cut_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_coul_cut_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_buck_coul_cut_gpu.cpp"
[ 96%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_cut_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_cut_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_cut_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_debye_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_debye_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_debye_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_tstat_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_tstat_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_dpd_tstat_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gauss_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gauss_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gauss_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj96_cut_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj96_cut_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj96_cut_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cubic_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cubic_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cubic_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_cut_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_cut_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_cut_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_debye_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_expand_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_expand_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_expand_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_mie_cut_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_mie_cut_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_mie_cut_gpu.cpp"
[ 97%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_morse_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_morse_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_morse_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_soft_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_soft_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_soft_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_table_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_table_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_table_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_ufm_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_ufm_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_ufm_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_zbl_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_zbl_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_zbl_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gayberne_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gayberne_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_gayberne_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_resquared_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_resquared_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_resquared_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_lj_class2_coul_long_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_colloid_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-UEF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-VTK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CORESHELL" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/QEQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-OMP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/OPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/debian/build/styles" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/molfile" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/meam" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/poems" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/atc" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/systems/interact" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/awpmd/ivutils/include" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/lib/h5md/include" -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_colloid_gpu.cpp.o" -c "/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_colloid_gpu.cpp"
[ 98%] Building CXX object CMakeFiles/lmp.dir/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GPU/pair_yukawa_colloid_gpu.cpp.o
/usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_PYTHON -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/cmake/NETCDF_INCLUDE_DIR" -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/ASPHERE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/BODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/CLASS2" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COLLOID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/COMPRESS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/DIPOLE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/GRANULAR" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/KSPACE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MANYBODY" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MEAM" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MOLECULE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PERI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/REPLICA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/RIGID" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SHOCK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SNAP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/SRD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/PYTHON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/MPIIO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/VORONOI" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/POEMS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-ATC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-AWPMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-BOCS" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGDNA" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MESO" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-CGSDK" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DIFFRACTION" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DPD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-DRUDE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-EFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-FEP" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-H5MD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-LB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MANIFOLD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MEAMC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MGPT" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MISC" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOFFF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-MOLFILE" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-NETCDF" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-PHONON" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-QTB" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMD" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SMTBQ" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-SPH" -I"/<<BUILDDIR>>/lammps-0~20180822.gitb47e49223+dfsg1/src/USER-TALLY" -I"/<<BUILDDIR>>