lambda-align2 →
2.0.0-6 →
armhf → 2019-06-10 06:47:19
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| lambda-align2 2.0.0-6 (armhf) Mon, 10 Jun 2019 04:35:18 +0000 |
+==============================================================================+
Package: lambda-align2
Version: 2.0.0-6
Source Version: 2.0.0-6
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-17e603b8-da04-40a6-ad6f-cb9b22a33f2d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'lambda-align2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/lambda-align2.git
Please use:
git clone https://salsa.debian.org/med-team/lambda-align2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 364 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main lambda-align2 2.0.0-6 (dsc) [1824 B]
Get:2 http://172.17.0.1/private buster-staging/main lambda-align2 2.0.0-6 (tar) [346 kB]
Get:3 http://172.17.0.1/private buster-staging/main lambda-align2 2.0.0-6 (diff) [17.0 kB]
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I: NOTICE: Log filtering will replace 'build/lambda-align2-TNx8b1/lambda-align2-2.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/lambda-align2-TNx8b1' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4kw4kv/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4kw4kv/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4kw4kv/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ Packages [430 B]
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libnss-systemd libpam-systemd openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 84 not upgraded.
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Get:1 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl
Filtered Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl
dpkg-deb: building package 'sbuild-build-depends-lambda-align2-dummy' in '/<<BUILDDIR>>/resolver-4kw4kv/apt_archive/sbuild-build-depends-lambda-align2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-lambda-align2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4kw4kv/apt_archive ./ Sources [527 B]
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Reading package lists...
Install lambda-align2 build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales
libgpg-error-l10n libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbsd0 libbz2-dev libcroco3 libcurl4 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libjsoncpp1
libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1
libseqan2-dev libsigsegv2 libssh2-1 libtool libuchardet0 libuv1 libxml2 m4
man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs publicsuffix libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbsd0 libbz2-dev libcroco3 libcurl4 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libjsoncpp1
libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1
libseqan2-dev libsigsegv2 libssh2-1 libtool libuchardet0 libuv1 libxml2 m4
man-db po-debconf sbuild-build-depends-lambda-align2-dummy zlib1g-dev
0 upgraded, 46 newly installed, 0 to remove and 84 not upgraded.
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Get:4 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
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Get:10 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.35-4 [65.3 kB]
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Get:15 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
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Get:17 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
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Get:29 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.13.4-1 [2559 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
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Get:35 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
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Get:38 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf debhelper all 12.1.1 [1016 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libseqan2-dev all 2.4.0+dfsg-11 [1220 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
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Setting up libmagic-mgc (1:5.35-4) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libglib2.0-0:armhf (2.58.3-2) ...
No schema files found: removed existing output file.
Setting up libnghttp2-14:armhf (1.36.0-2) ...
Setting up libmagic1:armhf (1:5.35-4) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up file (1:5.35-4) ...
Setting up libicu63:armhf (63.1-6) ...
Setting up libseqan2-dev (2.4.0+dfsg-11) ...
Setting up autotools-dev (20180224.1) ...
Setting up libuv1:armhf (1.24.1-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-9) ...
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Setting up librhash0:armhf (1.3.8-1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up cmake-data (3.13.4-1) ...
Setting up libbsd0:armhf (0.9.1-2) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b1) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up libbz2-dev:armhf (1.0.6-9) ...
Setting up libfile-stripnondeterminism-perl (1.1.2-1) ...
Setting up libtool (2.4.6-9) ...
Setting up libarchive13:armhf (3.3.3-4) ...
Setting up m4 (1.4.18-2) ...
Setting up bsdmainutils (11.1.2) ...
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update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3) ...
Setting up libcurl4:armhf (7.64.0-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up cmake (3.13.4-1) ...
Setting up po-debconf (1.0.21) ...
Setting up debhelper (12.1.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up sbuild-build-depends-lambda-align2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.5 g++-8_8.2.0-21+rpi1 gcc-8_8.2.0-21+rpi1 libc6-dev_2.28-7+rpi1 libstdc++-8-dev_8.2.0-21+rpi1 libstdc++6_8.2.0-21+rpi1 linux-libc-dev_4.18.20-2+rpi1
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pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-lambda-align2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_241-1+rpi1 systemd-sysv_241-1+rpi1 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-1 udev_241-1+rpi1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Jun 8 12:53:28 2019 UTC
gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./lambda-align2_2.0.0-6.dsc
dpkg-source: info: extracting lambda-align2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking lambda-align2_2.0.0.orig.tar.gz
dpkg-source: info: unpacking lambda-align2_2.0.0-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying enable_tests
dpkg-source: info: applying 32bit
dpkg-source: info: applying set-seqan-cmake-dir.patch
dpkg-source: info: applying force-link-rt-pthread.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-17e603b8-da04-40a6-ad6f-cb9b22a33f2d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package lambda-align2
dpkg-buildpackage: info: source version 2.0.0-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --builddirectory=build
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if ls tests/*~ 1> /dev/null 2>&1; then \
for backup in tests/*~; do mv ${backup} ${backup%\~}; done; \
fi
dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--builddirectory=build
dh_clean -O--builddirectory=build
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/lambda-align2.substvars debian/files
rm -fr -- debian/lambda-align2/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build-arch
dh build-arch --builddirectory=build
dh_update_autotools_config -a -O--builddirectory=build
dh_autoreconf -a -O--builddirectory=build
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-DLAMBDA_NATIVE_BUILD=OFF \
-DLAMBDA_MMAPPED_DB=OFF \
-DCMAKE_BUILD_TYPE=Release \
"-DLAMBDA_MULTIOPT_BUILD=0" \
-DLAMBDA_COMPILE_THREADS=4
install -d build
cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=0 -DLAMBDA_COMPILE_THREADS=4 ..
[1mCompiler Detection[m
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
[1mDependency detection[m
-- These dependencies where found:
OPENMP TRUE -fopenmp
ZLIB TRUE 1.2.11
BZIP2 TRUE 1.0.6
SEQAN TRUE 2.4.0
-- The requirements where met.
[1mBuild configuration[m
-- LAMBDA version is: 2.0.0
-- The following options are selected for the build:
LAMBDA_FASTBUILD OFF
LAMBDA_LINGAPS_OPT OFF
LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF
LAMBDA_MMAPPED_DB OFF
LAMBDA_NATIVE_BUILD OFF
LAMBDA_MULTIOPT_BUILD 0
LAMBDA_STATIC_BUILD OFF
-- Run 'cmake -LH' to get a comment on each option.
-- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option.
[1mSetting up unit tests[m
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/build
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--builddirectory=build
cd build && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles /<<PKGBUILDDIR>>/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake --color=
Scanning dependencies of target lambda2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
[ 14%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=4 -s -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /<<PKGBUILDDIR>>/src/lambda.cpp
In file included from /<<PKGBUILDDIR>>/src/search.hpp:32,
from /<<PKGBUILDDIR>>/src/lambda.cpp:22:
/<<PKGBUILDDIR>>/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
setDate(parser, __DATE__);
^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/mkindex.hpp:36,
from /<<PKGBUILDDIR>>/src/lambda.cpp:23:
/<<PKGBUILDDIR>>/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string<char>]':
/<<PKGBUILDDIR>>/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
getcwd(cwd, 1000);
~~~~~~^~~~~~~~~~~
during IPA pass: pure-const
/<<PKGBUILDDIR>>/src/lambda.cpp: In member function 'std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()':
/<<PKGBUILDDIR>>/src/lambda.cpp:100:1: internal compiler error: Bus error
}
^
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-8/README.Bugs> for instructions.
The bug is not reproducible, so it is likely a hardware or OS problem.
make[3]: *** [src/CMakeFiles/lambda2.dir/build.make:66: src/CMakeFiles/lambda2.dir/lambda.cpp.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[2]: *** [CMakeFiles/Makefile2:133: src/CMakeFiles/lambda2.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[1]: *** [Makefile:155: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build'
dh_auto_build: cd build && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:18: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2019-06-10T06:46:23Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 6934
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 883
Job: lambda-align2_2.0.0-6
Machine Architecture: armhf
Package: lambda-align2
Package-Time: 7866
Source-Version: 2.0.0-6
Space: 0
Status: failed
Version: 2.0.0-6
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Finished at 2019-06-10T06:46:24Z
Build needed 00:00:00, 0k disc space