lambda-align2 →
2.0.0-4 →
armhf → 2019-01-26 09:13:02
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| lambda-align2 2.0.0-4 (armhf) Sat, 26 Jan 2019 08:58:22 +0000 |
+==============================================================================+
Package: lambda-align2
Version: 2.0.0-4
Source Version: 2.0.0-4
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-640f9ae8-9ce4-4bc8-96f8-5b912f590d39' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.2 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'lambda-align2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/lambda-align2.git
Please use:
git clone https://salsa.debian.org/med-team/lambda-align2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 365 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main lambda-align2 2.0.0-4 (dsc) [2169 B]
Get:2 http://172.17.0.1/private buster-staging/main lambda-align2 2.0.0-4 (tar) [346 kB]
Get:3 http://172.17.0.1/private buster-staging/main lambda-align2 2.0.0-4 (diff) [16.9 kB]
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I: NOTICE: Log filtering will replace 'build/lambda-align2-U2uott/lambda-align2-2.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/lambda-align2-U2uott' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-5ueeBv/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-5ueeBv/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-5ueeBv/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5ueeBv/apt_archive ./ InRelease
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Get:4 copy:/<<BUILDDIR>>/resolver-5ueeBv/apt_archive ./ Sources [349 B]
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 47 not upgraded.
Need to get 852 B of archives.
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debconf: delaying package configuration, since apt-utils is not installed
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl
Filtered Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl
dpkg-deb: building package 'sbuild-build-depends-lambda-align2-dummy' in '/<<BUILDDIR>>/resolver-5ueeBv/apt_archive/sbuild-build-depends-lambda-align2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-lambda-align2-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5ueeBv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5ueeBv/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5ueeBv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5ueeBv/apt_archive ./ Sources [527 B]
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Reading package lists...
Install lambda-align2 build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales
libgpg-error-l10n libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbsd0 libbz2-dev libcroco3 libcurl4 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu63
libjsoncpp1 libkrb5-3 libkrb5support0 libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librhash0 librtmp1 libseqan2-dev libsigsegv2 libssh2-1
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs publicsuffix libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libbsd0 libbz2-dev libcroco3 libcurl4 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libjsoncpp1
libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1
libseqan2-dev libsigsegv2 libssh2-1 libtool libuchardet0 libuv1 libxml2 m4
man-db po-debconf sbuild-build-depends-lambda-align2-dummy zlib1g-dev
The following packages will be upgraded:
libgssapi-krb5-2 libkrb5-3 libkrb5support0
3 upgraded, 46 newly installed, 0 to remove and 44 not upgraded.
Need to get 25.0 MB/25.1 MB of archives.
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Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
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Get:4 http://172.17.0.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.4-2 [782 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.5-1 [1231 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.17-1 [62.1 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.17-1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.17-1 [135 kB]
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Get:15 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
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Get:22 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
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Get:33 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-8 [547 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.0-1 [19.5 kB]
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Get:38 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.175-2 [157 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.2-3 [1076 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf debhelper all 12 [1002 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libseqan2-dev all 2.4.0+dfsg-8 [1219 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
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Unpacking sbuild-build-depends-lambda-align2-dummy (0.invalid.0) ...
Setting up libbz2-dev:armhf (1.0.6-9) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libnghttp2-14:armhf (1.35.1-1+b1) ...
Setting up libicu63:armhf (63.1-5) ...
Setting up libseqan2-dev (2.4.0+dfsg-8) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libuv1:armhf (1.24.1-1) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libelf1:armhf (0.175-2) ...
Setting up libglib2.0-0:armhf (2.58.2-3) ...
No schema files found: removed existing output file.
Setting up gettext-base (0.19.8.1-9) ...
Setting up cmake-data (3.13.2-1) ...
Setting up libpipeline1:armhf (1.5.0-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up m4 (1.4.18-2) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libmagic-mgc (1:5.35-2) ...
Setting up libmagic1:armhf (1:5.35-2) ...
Setting up librhash0:armhf (1.3.7-1) ...
Setting up libcroco3:armhf (0.6.12-3) ...
Setting up libssh2-1:armhf (1.8.0-2) ...
Processing triggers for libc-bin (2.28-2) ...
Setting up dwz (0.12-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-9) ...
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Setting up libfile-stripnondeterminism-perl (1.1.0-1) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libarchive13:armhf (3.3.3-3) ...
Setting up groff-base (1.22.4-2) ...
Setting up libcurl4:armhf (7.63.0-1) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.35-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up cmake (3.13.2-1) ...
Setting up libtool (2.4.6-8) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.0-1) ...
Setting up debhelper (12) ...
Setting up sbuild-build-depends-lambda-align2-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-11+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-13+rpi1 gcc-8_8.2.0-13+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-13+rpi1 libstdc++6_8.2.0-13+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11+rpi1 binutils-arm-linux-gnueabihf_2.31.1-11+rpi1 binutils-common_2.31.1-11+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 cmake_3.13.2-1 cmake-data_3.13.2-1 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-13+rpi1 dash_0.5.10.2-4 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.69 debhelper_12 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.1.0-1 diffutils_1:3.6-1 dirmngr_2.2.12-1+rpi1 dmsetup_2:1.02.155-1 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 e2fsprogs-l10n_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-13+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 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patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-lambda-align2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-2+rpi1 systemd-sysv_240-2+rpi1 sysvinit-utils_2.93-3 tar_1.30+dfsg-4 tzdata_2018i-1 udev_240-2+rpi1 util-linux_2.33.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 23 20:06:54 2019 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./lambda-align2_2.0.0-4.dsc
dpkg-source: info: extracting lambda-align2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking lambda-align2_2.0.0.orig.tar.gz
dpkg-source: info: unpacking lambda-align2_2.0.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying enable_tests
dpkg-source: info: applying 32bit
dpkg-source: info: applying set-seqan-cmake-dir.patch
dpkg-source: info: applying force-link-rt-pthread.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-640f9ae8-9ce4-4bc8-96f8-5b912f590d39
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package lambda-align2
dpkg-buildpackage: info: source version 2.0.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --builddirectory=build
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if ls tests/*~ 1> /dev/null 2>&1; then \
for backup in tests/*~; do mv ${backup} ${backup%\~}; done; \
fi
dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--builddirectory=build
dh_clean -O--builddirectory=build
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/lambda-align2.substvars debian/files
rm -fr -- debian/lambda-align2/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build-arch
dh build-arch --builddirectory=build
dh_update_autotools_config -a -O--builddirectory=build
dh_autoreconf -a -O--builddirectory=build
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-DLAMBDA_NATIVE_BUILD=OFF \
-DLAMBDA_MMAPPED_DB=OFF \
-DCMAKE_BUILD_TYPE=Release \
"-DLAMBDA_MULTIOPT_BUILD=0" \
-DLAMBDA_COMPILE_THREADS=8
install -d build
cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=0 -DLAMBDA_COMPILE_THREADS=8 ..
[1mCompiler Detection[m
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
[1mDependency detection[m
-- These dependencies where found:
OPENMP TRUE -fopenmp
ZLIB TRUE 1.2.11
BZIP2 TRUE 1.0.6
SEQAN TRUE 2.4.0
-- The requirements where met.
[1mBuild configuration[m
-- LAMBDA version is: 2.0.0
-- The following options are selected for the build:
LAMBDA_FASTBUILD OFF
LAMBDA_LINGAPS_OPT OFF
LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF
LAMBDA_MMAPPED_DB OFF
LAMBDA_NATIVE_BUILD OFF
LAMBDA_MULTIOPT_BUILD 0
LAMBDA_STATIC_BUILD OFF
-- Run 'cmake -LH' to get a comment on each option.
-- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option.
[1mSetting up unit tests[m
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/build
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--builddirectory=build
cd build && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles /<<PKGBUILDDIR>>/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake --color=
Scanning dependencies of target lambda2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
[ 14%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=8 -s -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /<<PKGBUILDDIR>>/src/lambda.cpp
In file included from /<<PKGBUILDDIR>>/src/search.hpp:32,
from /<<PKGBUILDDIR>>/src/lambda.cpp:22:
/<<PKGBUILDDIR>>/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
setDate(parser, __DATE__);
^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/mkindex.hpp:36,
from /<<PKGBUILDDIR>>/src/lambda.cpp:23:
/<<PKGBUILDDIR>>/src/mkindex_misc.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string<char>]':
/<<PKGBUILDDIR>>/src/mkindex_misc.hpp:33:11: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
getcwd(cwd, 1000);
~~~~~~^~~~~~~~~~~
[ 28%] Linking CXX executable ../bin/lambda2
cd /<<PKGBUILDDIR>>/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=8 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
[ 28%] Built target lambda2
make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/manual.dir/DependInfo.cmake --color=
Scanning dependencies of target manual
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
[ 57%] Generating lambda2.1
[ 57%] Generating lambda2-searchp.1
[ 71%] Generating lambda2-mkindexn.1
cd /<<PKGBUILDDIR>>/build/src && ../bin/lambda2 --export-help=man > lambda2.1
cd /<<PKGBUILDDIR>>/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1
cd /<<PKGBUILDDIR>>/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1
mkdir: cannot create directory '/sbuild-nonexistent': Permission denied
mkdir: cannot create directory '/sbuild-nonexistent': Permission denied
mkdir: cannot create directory '/sbuild-nonexistent': Permission denied
[ 85%] Generating lambda2-searchn.1
cd /<<PKGBUILDDIR>>/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1
mkdir: cannot create directory '/sbuild-nonexistent': Permission denied
[100%] Generating lambda2-mkindexp.1
cd /<<PKGBUILDDIR>>/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1
mkdir: cannot create directory '/sbuild-nonexistent': Permission denied
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
[100%] Built target manual
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build'
rm -f debian/lambda-align2.debhelper.log
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
#for md5 in debian/*.md5sums; do gzip --keep ${md5}; done
#cp --backup debian/*md5sums.gz tests/
#cd build/tests && ctest . -j8 -I 1,10
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --builddirectory=build
dh_testroot -a -O--builddirectory=build
dh_prep -a -O--builddirectory=build
rm -f -- debian/lambda-align2.substvars
rm -fr -- debian/.debhelper/generated/lambda-align2/ debian/lambda-align2/ debian/tmp/
dh_auto_install -a -O--builddirectory=build
install -d /<<PKGBUILDDIR>>/debian/lambda-align2
cd build && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles /<<PKGBUILDDIR>>/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
make[3]: Nothing to be done for 'src/CMakeFiles/lambda2.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
[ 28%] Built target lambda2
make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
cd /<<PKGBUILDDIR>>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/build /<<PKGBUILDDIR>>/build/src /<<PKGBUILDDIR>>/build/src/CMakeFiles/manual.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
make[3]: Nothing to be done for 'src/CMakeFiles/manual.dir/build'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
[100%] Built target manual
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/doc/lambda2/LICENSE.rst
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-BSD.rst
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/doc/lambda2/LICENSE-AGPL3.rst
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/doc/lambda2/README.rst
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/man/man1/lambda2.1
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1
-- Installing: /<<PKGBUILDDIR>>/debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>/build'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
install -d debian/.debhelper/generated/lambda-align2
find debian -name "LICENSE*.rst" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--builddirectory=build
install -d debian/lambda-align2/usr/share/doc/lambda-align2
install -p -m0644 debian/copyright debian/lambda-align2/usr/share/doc/lambda-align2/copyright
dh_installchangelogs -a -O--builddirectory=build
install -p -m0644 debian/changelog debian/lambda-align2/usr/share/doc/lambda-align2/changelog.Debian
rm -f debian/lambda-align2.debhelper.log
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
sed -i 's/LAMBDA2 MKINDEXN/LAMBDA2_MKINDEXN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1
sed -i 's/^lambda2 mkindexn /lambda2_mkindexn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1
sed -i 's/LAMBDA2 MKINDEXP/LAMBDA2_MKINDEXP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1
sed -i 's/^lambda2 mkindexp /lambda2_mkindexp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1
sed -i 's/LAMBDA2 SEARCHN/LAMBDA2_SEARCHN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1
sed -i 's/^lambda2 searchn /lambda2_searchn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1
sed -i 's/LAMBDA2 SEARCHP/LAMBDA2_SEARCHP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1
sed -i 's/^lambda2 searchp /lambda2_searchp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1
dh_installman
man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 > debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new
man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 > debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new
man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2.1 > debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new
mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1
man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 > debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new
mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1
chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1
mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1
man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 > debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new
mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1
chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1
mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1
chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installinit -a -O--builddirectory=build
dh_installsystemduser -a -O--builddirectory=build
dh_perl -a -O--builddirectory=build
dh_link -a -O--builddirectory=build
dh_strip_nondeterminism -a -O--builddirectory=build
dh_compress -a -O--builddirectory=build
cd debian/lambda-align2
chmod a-x usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1
gzip -9nf usr/share/doc/lambda-align2/changelog.Debian usr/share/doc/lambda2/README.rst usr/share/man/man1/lambda2-mkindexn.1 usr/share/man/man1/lambda2-mkindexp.1 usr/share/man/man1/lambda2-searchn.1 usr/share/man/man1/lambda2-searchp.1 usr/share/man/man1/lambda2.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--builddirectory=build
find debian/lambda-align2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/lambda-align2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/lambda-align2/usr/share/doc -type f -a -true -a ! -regex 'debian/lambda-align2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/lambda-align2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/lambda-align2/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/lambda-align2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
dh_missing -a -O--builddirectory=build
rm -f debian/lambda-align2.debhelper.log
debian/rules override_dh_dwz
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# pass
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_strip -a -O--builddirectory=build
dh_makeshlibs -a -O--builddirectory=build
rm -f debian/lambda-align2/DEBIAN/shlibs
dh_shlibdeps -a -O--builddirectory=build
dh_installdeb -a -O--builddirectory=build
install -d debian/lambda-align2/DEBIAN
dh_gencontrol -a -O--builddirectory=build
echo misc:Depends= >> debian/lambda-align2.substvars
echo misc:Pre-Depends= >> debian/lambda-align2.substvars
dpkg-gencontrol -plambda-align2 -ldebian/changelog -Tdebian/lambda-align2.substvars -Pdebian/lambda-align2 -UMulti-Arch
dpkg-gencontrol: warning: Depends field of package lambda-align2: substitution variable ${shlibs:Depends} used, but is not defined
chmod 0644 -- debian/lambda-align2/DEBIAN/control
chown 0:0 -- debian/lambda-align2/DEBIAN/control
dh_md5sums -a -O--builddirectory=build
cd debian/lambda-align2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/lambda-align2/DEBIAN/md5sums
chown 0:0 -- debian/lambda-align2/DEBIAN/md5sums
dh_builddeb -a -O--builddirectory=build
dpkg-deb --build debian/lambda-align2 ..
dpkg-deb: building package 'lambda-align2' in '../lambda-align2_2.0.0-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../lambda-align2_2.0.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-01-26T09:13:01Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
lambda-align2_2.0.0-4_armhf.changes:
------------------------------------
Format: 1.8
Date: Wed, 23 Jan 2019 11:54:46 -0800
Source: lambda-align2
Binary: lambda-align2
Architecture: armhf
Version: 2.0.0-4
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
lambda-align2 - Local Aligner for Massive Biological DatA - v2
Changes:
lambda-align2 (2.0.0-4) unstable; urgency=medium
.
* Skip checking md5sums in the tests as they are not currently stable.
* Post process the unix manual pages to remove errors with regards to the
subcommands.
Checksums-Sha1:
9846c311895355782ef2d1cc5c9a163dc4f83c6d 5268 lambda-align2_2.0.0-4_armhf.buildinfo
3a7e7331cd39ec52b464d28c0ce4afff5d70fc72 26832 lambda-align2_2.0.0-4_armhf.deb
Checksums-Sha256:
d56b0ea401c9df6f5fb3bf2863777b566552761601bf378bd9030be12ef1aacc 5268 lambda-align2_2.0.0-4_armhf.buildinfo
7520aade76edab0f6b233aca246b7eadcfea1463eadafe7e0489c4434155b0c4 26832 lambda-align2_2.0.0-4_armhf.deb
Files:
43d5af848dd2be2a9f4034fb2730da1e 5268 science optional lambda-align2_2.0.0-4_armhf.buildinfo
11a8f69a1abe6c67929e8daf8b72820a 26832 science optional lambda-align2_2.0.0-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
lambda-align2_2.0.0-4_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 26832 bytes: control archive=1028 bytes.
811 bytes, 17 lines control
588 bytes, 8 lines md5sums
Package: lambda-align2
Version: 2.0.0-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 62
Section: science
Priority: optional
Homepage: https://seqan.github.io/lambda
Description: Local Aligner for Massive Biological DatA - v2
Lambda2 is a local biosequence aligner optimized for many query sequences
and searches in protein space. It is compatible to the de facto standard tool
BLAST, but often outperforms the best currently available alternatives at
reproducing BLAST’s results and is the fastest compared with the current
state of the art at comparable levels of sensitivity.
.
This package is for the Lambda (align) v2.x series which has an incompatible
command line interface and on disk format from Lambda (align) v1.x.
drwxr-xr-x root/root 0 2019-01-23 19:54 ./
drwxr-xr-x root/root 0 2019-01-23 19:54 ./usr/
drwxr-xr-x root/root 0 2019-01-23 19:54 ./usr/share/
drwxr-xr-x root/root 0 2019-01-23 19:54 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-01-23 19:54 ./usr/share/doc/lambda-align2/
-rw-r--r-- root/root 480 2019-01-23 19:54 ./usr/share/doc/lambda-align2/changelog.Debian.gz
-rw-r--r-- root/root 36832 2019-01-14 16:25 ./usr/share/doc/lambda-align2/copyright
drwxr-xr-x root/root 0 2019-01-23 19:54 ./usr/share/doc/lambda2/
-rw-r--r-- root/root 2078 2019-01-11 12:44 ./usr/share/doc/lambda2/README.rst.gz
drwxr-xr-x root/root 0 2019-01-23 19:54 ./usr/share/man/
drwxr-xr-x root/root 0 2019-01-23 19:54 ./usr/share/man/man1/
-rw-r--r-- root/root 1842 2019-01-23 19:54 ./usr/share/man/man1/lambda2-mkindexn.1.gz
-rw-r--r-- root/root 2079 2019-01-23 19:54 ./usr/share/man/man1/lambda2-mkindexp.1.gz
-rw-r--r-- root/root 2864 2019-01-23 19:54 ./usr/share/man/man1/lambda2-searchn.1.gz
-rw-r--r-- root/root 3191 2019-01-23 19:54 ./usr/share/man/man1/lambda2-searchp.1.gz
-rw-r--r-- root/root 990 2019-01-23 19:54 ./usr/share/man/man1/lambda2.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 163668
Build-Time: 602
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 260
Job: lambda-align2_2.0.0-4
Machine Architecture: armhf
Package: lambda-align2
Package-Time: 879
Source-Version: 2.0.0-4
Space: 163668
Status: successful
Version: 2.0.0-4
--------------------------------------------------------------------------------
Finished at 2019-01-26T09:13:01Z
Build needed 00:14:39, 163668k disk space