kmc →
2.3+dfsg-4 →
armhf → 2016-04-09 05:40:35
sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on bm-wb-01
+==============================================================================+
| kmc 2.3+dfsg-4 (armhf) 09 Apr 2016 05:15 |
+==============================================================================+
Package: kmc
Version: 2.3+dfsg-4
Source Version: 2.3+dfsg-4
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/kmc-hYyWZr/kmc-2.3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kmc-hYyWZr' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-412b4de3-5990-487e-a385-5e858523ed84' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8889 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.0 MB]
Fetched 19.9 MB in 1min 2s (317 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'kmc' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/kmc.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/kmc.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 163 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main kmc 2.3+dfsg-4 (dsc) [2114 B]
Get:2 http://172.17.0.1/private stretch-staging/main kmc 2.3+dfsg-4 (tar) [129 kB]
Get:3 http://172.17.0.1/private stretch-staging/main kmc 2.3+dfsg-4 (diff) [31.4 kB]
Fetched 163 kB in 0s (1406 kB/s)
Download complete and in download only mode
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-q4BFfk/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Packages [526 B]
Ign:4 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ Packages [526 B]
Reading package lists...
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
manpages
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 49 not upgraded.
Need to get 0 B/762 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-q4BFfk/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [762 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), dh-exec, zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs
Filtered Build-Depends: debhelper (>= 9), dh-exec, zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs
dpkg-deb: building package 'sbuild-build-depends-kmc-dummy' in '/<<BUILDDIR>>/resolver-1GlOgp/apt_archive/sbuild-build-depends-kmc-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Sources [248 B]
Get:5 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Packages [564 B]
Ign:4 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Sources [248 B]
Get:5 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ Packages [564 B]
Reading package lists...
Reading package lists...
Install kmc build dependencies (apt-based resolver)
---------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
manpages
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils
ca-certificates d-shlibs debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55
liblocale-gettext-perl libmagic1 libpipeline1 libruby2.3 libsigsegv2
libssl1.0.2 libtimedate-perl libtool libunistring0 libxml2 libyaml-0-2 m4
man-db openssl po-debconf rake ruby ruby-did-you-mean ruby-minitest
ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3
rubygems-integration zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl ri ruby-dev bundler
Recommended packages:
curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl zip fonts-lato
libjs-jquery
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils
ca-certificates d-shlibs debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism file gettext gettext-base groff-base help2man
intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55
liblocale-gettext-perl libmagic1 libpipeline1 libruby2.3 libsigsegv2
libssl1.0.2 libtimedate-perl libtool libunistring0 libxml2 libyaml-0-2 m4
man-db openssl po-debconf rake ruby ruby-did-you-mean ruby-minitest
ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3
rubygems-integration sbuild-build-depends-kmc-dummy zlib1g-dev
0 upgraded, 52 newly installed, 0 to remove and 49 not upgraded.
Need to get 24.2 MB/24.2 MB of archives.
After this operation, 83.7 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-1GlOgp/apt_archive ./ sbuild-build-depends-kmc-dummy 0.invalid.0 [802 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf liblocale-gettext-perl armhf 1.07-1+b1 [18.0 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.2-1 [88.0 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libyaml-0-2 armhf 0.1.6-3 [41.5 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2g-1 [886 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.0.2g-1 [666 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20160104 [200 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf rubygems-integration all 1.10 [4882 B]
Get:21 http://172.17.0.1/private stretch-staging/main armhf rake all 10.5.0-2 [49.4 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf ruby-did-you-mean all 1.0.0-2 [11.2 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf ruby-minitest all 5.8.4-2 [50.3 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf ruby-power-assert all 0.2.7-1 [7578 B]
Get:26 http://172.17.0.1/private stretch-staging/main armhf ruby-test-unit all 3.1.7-2 [69.6 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libruby2.3 armhf 2.3.0-5 [2834 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf ruby2.3 armhf 2.3.0-5 [167 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf ruby all 1:2.3.0+1 [10.2 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf asciidoctor all 1.5.4-1 [163 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.7-2 [424 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf d-shlibs all 0.66 [16.8 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.0-1 [2540 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.3 [154 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf dh-exec armhf 0.23 [24.9 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../dh-strip-nondeterminism_0.016-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.016-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../libtool_2.4.6-0.1_all.deb ...
Unpacking libtool (2.4.6-0.1) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20160403_all.deb ...
Unpacking debhelper (9.20160403) ...
Selecting previously unselected package help2man.
Preparing to unpack .../help2man_1.47.3_armhf.deb ...
Unpacking help2man (1.47.3) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../libbz2-dev_1.0.6-8_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.6-8) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package dh-exec.
Preparing to unpack .../dh-exec_0.23_armhf.deb ...
Unpacking dh-exec (0.23) ...
Selecting previously unselected package sbuild-build-depends-kmc-dummy.
Preparing to unpack .../sbuild-build-depends-kmc-dummy.deb ...
Unpacking sbuild-build-depends-kmc-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-3) ...
Setting up liblocale-gettext-perl (1.07-1+b1) ...
Setting up groff-base (1.22.3-7) ...
Setting up libbsd0:armhf (0.8.2-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libyaml-0-2:armhf (0.1.6-3) ...
Setting up libssl1.0.2:armhf (1.0.2g-1) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up m4 (1.4.17-5) ...
Setting up openssl (1.0.2g-1) ...
Setting up ca-certificates (20160104) ...
Setting up rubygems-integration (1.10) ...
Setting up ruby-did-you-mean (1.0.0-2) ...
Setting up ruby-minitest (5.8.4-2) ...
Setting up ruby-net-telnet (0.1.1-2) ...
Setting up ruby-power-assert (0.2.7-1) ...
Setting up ruby-test-unit (3.1.7-2) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up autoconf (2.69-10) ...
Setting up autotools-dev (20150820.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.7-2) ...
Setting up d-shlibs (0.66) ...
Setting up libglib2.0-0:armhf (2.48.0-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.57-1) ...
Setting up libfile-stripnondeterminism-perl (0.016-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libtool (2.4.6-0.1) ...
Setting up help2man (1.47.3) ...
Setting up libbz2-dev:armhf (1.0.6-8) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up rake (10.5.0-2) ...
Setting up libruby2.3:armhf (2.3.0-5) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Setting up dh-autoreconf (12) ...
Setting up ruby2.3 (2.3.0-5) ...
Setting up ruby (1:2.3.0+1) ...
Setting up asciidoctor (1.5.4-1) ...
Setting up debhelper (9.20160403) ...
Setting up dh-exec (0.23) ...
Setting up sbuild-build-depends-kmc-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-3) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-5 dpkg-dev_1.18.4 g++-5_5.3.1-11 gcc-5_5.3.1-11 libc6-dev_2.22-3 libstdc++-5-dev_5.3.1-11 libstdc++6_5.3.1-11 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.114 apt_1.2.6 asciidoctor_1.5.4-1 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.7-2 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-5 bsdmainutils_9.0.10 bsdutils_1:2.27.1-6 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20160104 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-11 d-shlibs_0.66 dash_0.5.8-2.1 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.7 dh-autoreconf_12 dh-exec_0.23 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.116-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-11 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-12 gcc-5_5.3.1-11 gcc-5-base_5.3.1-11 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-4 gpgv_1.4.20-4 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 help2man_1.47.3 hostname_3.17 init_1.29 init-system-helpers_1.29 initscripts_2.88dsf-59.3 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-8+rpi1 kmod_22-1 libacl1_2.2.52-3 libapparmor1_2.10-3 libapt-pkg5.0_1.2.6 libarchive-zip-perl_1.57-1 libasan2_5.3.1-11 libatomic1_5.3.1-11 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-6 libbsd0_0.8.2-1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.22-3 libc-dev-bin_2.22-3 libc6_2.22-3 libc6-dev_2.22-3 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-11 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.207 libdevmapper1.02.1_2:1.02.116-1 libdpkg-perl_1.18.4 libdrm2_2.4.67-1 libfakeroot_1.20.2-1 libfdisk1_2.27.1-6 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-11 libgcc1_1:5.3.1-11 libgcrypt20_1.6.5-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.0-1 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-11 libgpg-error0_1.21-2 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-8+rpi1 libkmod2_22-1 liblocale-gettext-perl_1.07-1+b1 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-6 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160213-1 libncursesw5_6.0+20160213-1 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-3 libperl5.22_5.22.1-9 libpipeline1_1.4.1-2 libpng12-0_1.2.54-4 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libruby2.3_2.3.0-5 libseccomp2_2.2.3-3 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-5 libsmartcols1_2.27.1-6 libss2_1.42.13-1 libssl1.0.2_1.0.2g-1 libstdc++-5-dev_5.3.1-11 libstdc++6_5.3.1-11 libsystemd0_229-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1 libtool_2.4.6-0.1 libubsan0_5.3.1-11 libudev1_229-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6 libxml2_2.9.3+dfsg1-1 libyaml-0-2_0.1.6-3 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-6 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-2 mawk_1.3.3-17 mount_2.27.1-6 multiarch-support_2.22-3 nano_2.5.3-2 ncurses-base_6.0+20160213-1 ncurses-bin_6.0+20160213-1 openssl_1.0.2g-1 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 po-debconf_1.0.19 procps_2:3.3.11-3 rake_10.5.0-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 ruby_1:2.3.0+1 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.8.4-2 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.2.7-1 ruby-test-unit_3.1.7-2 ruby2.3_2.3.0-5 rubygems-integration_1.10 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kmc-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_229-2 systemd-sysv_229-2 sysv-rc_2.88dsf-59.3 sysvinit-utils_2.88dsf-59.3 tar_1.28-2.1 tzdata_2016a-1 udev_229-2 util-linux_2.27.1-6 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Mar 29 20:45:22 2016 UTC using RSA key ID F09F4872
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./kmc_2.3+dfsg-4.dsc
dpkg-source: info: extracting kmc in kmc-2.3+dfsg
dpkg-source: info: unpacking kmc_2.3+dfsg.orig.tar.gz
dpkg-source: info: unpacking kmc_2.3+dfsg-4.debian.tar.xz
dpkg-source: info: applying disable-asmlib
dpkg-source: info: applying use-shared-libs
dpkg-source: info: applying hardening
dpkg-source: info: applying 0005-Add-static-library-target-to-makefile.patch
dpkg-source: info: applying 0007-Use-standard-compiler-environment-variables.patch
dpkg-source: info: applying spelling
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-412b4de3-5990-487e-a385-5e858523ed84
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package kmc
dpkg-buildpackage: source version 2.3+dfsg-4
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build kmc-2.3+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
rm -rf /<<BUILDDIR>>/kmc-2.3+dfsg/debian/man_src/*.html /<<BUILDDIR>>/kmc-2.3+dfsg/debian/man_src/*.?
rm -rf /<<BUILDDIR>>/kmc-2.3+dfsg/debian/man
dh_auto_clean --
make -j4 clean
make[2]: Entering directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule
rm kmer_counter/*.o
rm: cannot remove 'kmer_counter/*.o': No such file or directory
makefile:80: recipe for target 'clean' failed
make[2]: [clean] Error 1 (ignored)
rm kmc_api/*.o
rm: cannot remove 'kmc_api/*.o': No such file or directory
makefile:80: recipe for target 'clean' failed
make[2]: [clean] Error 1 (ignored)
rm kmc_dump/*.o
rm: cannot remove 'kmc_dump/*.o': No such file or directory
makefile:80: recipe for target 'clean' failed
make[2]: [clean] Error 1 (ignored)
rm kmc_tools/*.o
rm: cannot remove 'kmc_tools/*.o': No such file or directory
makefile:80: recipe for target 'clean' failed
make[2]: [clean] Error 1 (ignored)
rm -rf bin
rm -f libkmc.a
make[2]: Leaving directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
dh_clean -O--parallel
rm -f debian/debhelper-build-stamp
rm -f debian/kmc.substvars
rm -f debian/kmc.*.debhelper
rm -rf debian/kmc/
rm -f debian/libkmc-dev.substvars
rm -f debian/libkmc-dev.*.debhelper
rm -rf debian/libkmc-dev/
rm -rf debian/.debhelper/
rm -f debian/*.debhelper.log
rm -f debian/files
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
rm -f *-stamp
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_auto_configure -a -O--parallel
dh_auto_build -a -O--parallel
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/mmer.cpp -o kmer_counter/mmer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/mem_disk_file.cpp -o kmer_counter/mem_disk_file.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/rev_byte.cpp -o kmer_counter/rev_byte.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/bkb_writer.cpp -o kmer_counter/bkb_writer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/bkb_reader.cpp -o kmer_counter/bkb_reader.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/fastq_reader.cpp -o kmer_counter/fastq_reader.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/timer.cpp -o kmer_counter/timer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/radix.cpp -o kmer_counter/radix.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kb_completer.cpp -o kmer_counter/kb_completer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kb_storer.cpp -o kmer_counter/kb_storer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer.cpp -o kmer_counter/kmer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/prob_qual.cpp -o kmer_counter/prob_qual.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/mmer.cpp -o kmc_api/mmer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o
kmc_api/kmc_file.cpp: In member function 'bool CKMCFile::BinarySearch(int64, int64, const CKmerAPI&, uint64&, uint32)':
kmc_api/kmc_file.cpp:1360:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (index_start >= total_kmers)
^
kmc_api/kmc_file.cpp: In member function 'void CKMCFile::Reload_sufix_file_buf()':
kmc_api/kmc_file.cpp:607:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (sufix_file_buf, 1, (size_t) part_size, file_suf);
^
kmc_api/kmc_file.cpp: In member function 'bool CKMCFile::RestartListing()':
kmc_api/kmc_file.cpp:653:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
fread (sufix_file_buf, 1, (size_t) part_size, file_suf);
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_header.cpp -o kmc_tools/kmc_header.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o
ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o
ranlib libkmc.a
mkdir -p bin
g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_api/mmer.o kmc_dump/kmc_dump.o kmc_api/kmc_file.o kmc_api/kmer_api.o -fPIE -pie -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread
mkdir -p bin
g++ -o bin/kmc_tools kmc_tools/kmc_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -fPIE -pie -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread
mkdir -p bin
g++ -o bin/kmc kmer_counter/kmer_counter.o kmer_counter/mmer.o kmer_counter/mem_disk_file.o kmer_counter/rev_byte.o kmer_counter/bkb_writer.o kmer_counter/bkb_reader.o kmer_counter/fastq_reader.o kmer_counter/timer.o kmer_counter/radix.o kmer_counter/kb_completer.o kmer_counter/kb_storer.o kmer_counter/kmer.o kmer_counter/prob_qual.o -fPIE -pie -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread
make[1]: Leaving directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
dh_auto_test -a -O--parallel
fakeroot debian/rules binary-arch
dh binary-arch --parallel
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
rm -f debian/kmc.substvars
rm -f debian/kmc.*.debhelper
rm -rf debian/kmc/
rm -f debian/libkmc-dev.substvars
rm -f debian/libkmc-dev.*.debhelper
rm -rf debian/libkmc-dev/
dh_auto_install -a -O--parallel
install -d debian/kmc
install -d debian/libkmc-dev
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
dh_install
install -d debian/kmc//bin
cp --reflink=auto -a ./bin/kmc debian/kmc//bin/
cp --reflink=auto -a ./bin/kmc_dump debian/kmc//bin/
cp --reflink=auto -a ./bin/kmc_tools debian/kmc//bin/
install -d debian/libkmc-dev/usr/include/kmc
cp --reflink=auto -a ./kmc_api/kmc_file.h debian/libkmc-dev/usr/include/kmc/
cp --reflink=auto -a ./kmc_api/kmer_api.h debian/libkmc-dev/usr/include/kmc/
cp --reflink=auto -a ./kmc_api/kmer_defs.h debian/libkmc-dev/usr/include/kmc/
cp --reflink=auto -a ./kmc_api/mmer.h debian/libkmc-dev/usr/include/kmc/
cp --reflink=auto -a ./kmc_api/stdafx.h debian/libkmc-dev/usr/include/kmc/
install -d debian/libkmc-dev/usr/lib/arm-linux-gnueabihf
cp --reflink=auto -a ./libkmc.a debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/
make[1]: Leaving directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
dh_installdocs -a -O--parallel
install -d debian/kmc/usr/share/doc/kmc
install -p -m0644 debian/copyright debian/kmc/usr/share/doc/kmc/copyright
install -d debian/libkmc-dev/usr/share/doc/libkmc-dev
install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright
dh_installchangelogs -a -O--parallel
install -p -m0644 debian/changelog debian/kmc/usr/share/doc/kmc/changelog.Debian
install -p -m0644 debian/changelog debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
mkdir -p /<<BUILDDIR>>/kmc-2.3+dfsg/debian/man
/<<BUILDDIR>>/kmc-2.3+dfsg/debian/usage_to_man
Can't exec "1": No such file or directory at /<<BUILDDIR>>/kmc-2.3+dfsg/debian/usage_to_man line 19.
Creating manpages
Manpage creation complete
Manpage creation complete
asciidoctor -a docdate='' -b manpage /<<BUILDDIR>>/kmc-2.3+dfsg/debian/man_src/*.adoc
cp /<<BUILDDIR>>/kmc-2.3+dfsg/debian/man_src/*.? /<<BUILDDIR>>/kmc-2.3+dfsg/debian/man
dh_installman --
install -d debian/kmc/usr/share/man/man1/
install -p -m0644 man/kmc.1 debian/kmc/usr/share/man/man1/kmc.1
install -p -m0644 man/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_dump.1
install -p -m0644 debian/man/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1
install -p -m0644 debian/man/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1
install -p -m0644 debian/man/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1
install -p -m0644 debian/man/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1
install -p -m0644 debian/man/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1
install -p -m0644 debian/man/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1
install -p -m0644 debian/man/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1
install -p -m0644 debian/man/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1
install -p -m0644 debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1
install -p -m0644 debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1
install -p -m0644 debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1
man --recode UTF-8 ./kmc\.1 > kmc\.1\.new
chmod 644 kmc.1.new
mv -f kmc.1.new kmc.1
man --recode UTF-8 ./kmc_dump\.1 > kmc_dump\.1\.new
chmod 644 kmc_dump.1.new
mv -f kmc_dump.1.new kmc_dump.1
man --recode UTF-8 ./kmc_tools\-compact\.1 > kmc_tools\-compact\.1\.new
chmod 644 kmc_tools-compact.1.new
mv -f kmc_tools-compact.1.new kmc_tools-compact.1
man --recode UTF-8 ./kmc_tools\-complex\.1 > kmc_tools\-complex\.1\.new
chmod 644 kmc_tools-complex.1.new
mv -f kmc_tools-complex.1.new kmc_tools-complex.1
man --recode UTF-8 ./kmc_tools\-counters_subtract\.1 > kmc_tools\-counters_subtract\.1\.new
chmod 644 kmc_tools-counters_subtract.1.new
mv -f kmc_tools-counters_subtract.1.new kmc_tools-counters_subtract.1
man --recode UTF-8 ./kmc_tools\-dump\.1 > kmc_tools\-dump\.1\.new
chmod 644 kmc_tools-dump.1.new
mv -f kmc_tools-dump.1.new kmc_tools-dump.1
man --recode UTF-8 ./kmc_tools\-filter\.1 > kmc_tools\-filter\.1\.new
chmod 644 kmc_tools-filter.1.new
mv -f kmc_tools-filter.1.new kmc_tools-filter.1
man --recode UTF-8 ./kmc_tools\-histogram\.1 > kmc_tools\-histogram\.1\.new
chmod 644 kmc_tools-histogram.1.new
mv -f kmc_tools-histogram.1.new kmc_tools-histogram.1
man --recode UTF-8 ./kmc_tools\-intersect\.1 > kmc_tools\-intersect\.1\.new
chmod 644 kmc_tools-intersect.1.new
mv -f kmc_tools-intersect.1.new kmc_tools-intersect.1
man --recode UTF-8 ./kmc_tools\-kmers_subtract\.1 > kmc_tools\-kmers_subtract\.1\.new
chmod 644 kmc_tools-kmers_subtract.1.new
mv -f kmc_tools-kmers_subtract.1.new kmc_tools-kmers_subtract.1
man --recode UTF-8 ./kmc_tools\-sort\.1 > kmc_tools\-sort\.1\.new
chmod 644 kmc_tools-sort.1.new
mv -f kmc_tools-sort.1.new kmc_tools-sort.1
man --recode UTF-8 ./kmc_tools\-union\.1 > kmc_tools\-union\.1\.new
chmod 644 kmc_tools-union.1.new
mv -f kmc_tools-union.1.new kmc_tools-union.1
man --recode UTF-8 ./kmc_tools\.1 > kmc_tools\.1\.new
chmod 644 kmc_tools.1.new
mv -f kmc_tools.1.new kmc_tools.1
make[1]: Leaving directory '/<<BUILDDIR>>/kmc-2.3+dfsg'
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
cd debian/kmc
chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1
gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1
cd '/<<BUILDDIR>>/kmc-2.3+dfsg'
cd debian/libkmc-dev
chmod a-x usr/share/doc/libkmc-dev/changelog.Debian
gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian
cd '/<<BUILDDIR>>/kmc-2.3+dfsg'
dh_fixperms -a -O--parallel
find debian/kmc -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/kmc ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/kmc/usr/share/doc -type f ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755
find debian/kmc/usr/share/man debian/kmc/usr/man/ debian/kmc/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc/usr/lib/arm-linux-gnueabihf/perl5/5.22 debian/kmc/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
find debian/kmc -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644
find debian/kmc/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
find debian/kmc/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
find debian/libkmc-dev -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/libkmc-dev ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/libkmc-dev/usr/share/doc -type f ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libkmc-dev/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755
find debian/libkmc-dev/usr/share/man debian/libkmc-dev/usr/man/ debian/libkmc-dev/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libkmc-dev/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libkmc-dev/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/perl5/5.22 debian/libkmc-dev/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
find debian/libkmc-dev -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644
find debian/libkmc-dev/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_strip -a -O--parallel
install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/51
objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/51/360757129db6badc742b9e844baca7b668412f.debug
chmod 0644 debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/51/360757129db6badc742b9e844baca7b668412f.debug
strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc
objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/51/360757129db6badc742b9e844baca7b668412f.debug debian/kmc/bin/kmc
install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/8c
objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/8c/c1a2e55db401e4d4b2e2ccafff59af58fbbfb8.debug
chmod 0644 debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/8c/c1a2e55db401e4d4b2e2ccafff59af58fbbfb8.debug
strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc_dump
objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/8c/c1a2e55db401e4d4b2e2ccafff59af58fbbfb8.debug debian/kmc/bin/kmc_dump
install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/64
objcopy --only-keep-debug --compress-debug-sections debian/kmc/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/64/ac8753255d23d6de1b6c7918091c6fc9fcd221.debug
chmod 0644 debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/64/ac8753255d23d6de1b6c7918091c6fc9fcd221.debug
strip --remove-section=.comment --remove-section=.note debian/kmc/bin/kmc_tools
objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/64/ac8753255d23d6de1b6c7918091c6fc9fcd221.debug debian/kmc/bin/kmc_tools
install -d debian/.debhelper/kmc/dbgsym-root/usr/share/doc
ln -s kmc debian/.debhelper/kmc/dbgsym-root/usr/share/doc/kmc-dbgsym
strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc.a
dh_makeshlibs -a -O--parallel
rm -f debian/kmc/DEBIAN/shlibs
rm -f debian/libkmc-dev/DEBIAN/shlibs
dh_shlibdeps -a -O--parallel
install -d debian/kmc/DEBIAN
dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/bin/kmc debian/kmc/bin/kmc_dump debian/kmc/bin/kmc_tools
install -d debian/libkmc-dev/DEBIAN
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
echo misc:Depends= >> debian/kmc.substvars
echo misc:Pre-Depends= >> debian/kmc.substvars
install -d debian/.debhelper/kmc/dbgsym-root/DEBIAN
dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/.debhelper/kmc/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=extra -DAuto-Built-Package=debug-symbols -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=Debug symbols for kmc" "-DBuild-Ids=51360757129db6badc742b9e844baca7b668412f 64ac8753255d23d6de1b6c7918091c6fc9fcd221 8cc1a2e55db401e4d4b2e2ccafff59af58fbbfb8" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 0644 debian/.debhelper/kmc/dbgsym-root/DEBIAN/control
chown 0:0 debian/.debhelper/kmc/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/kmc
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 0644 debian/kmc/DEBIAN/control
chown 0:0 debian/kmc/DEBIAN/control
echo misc:Depends= >> debian/libkmc-dev.substvars
echo misc:Pre-Depends= >> debian/libkmc-dev.substvars
dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev
dpkg-gencontrol: warning: Depends field of package libkmc-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 0644 debian/libkmc-dev/DEBIAN/control
chown 0:0 debian/libkmc-dev/DEBIAN/control
dh_md5sums -a -O--parallel
(cd debian/kmc >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 0644 debian/kmc/DEBIAN/md5sums
chown 0:0 debian/kmc/DEBIAN/md5sums
(cd debian/.debhelper/kmc/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 0644 debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums
chown 0:0 debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums
(cd debian/libkmc-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 0644 debian/libkmc-dev/DEBIAN/md5sums
chown 0:0 debian/libkmc-dev/DEBIAN/md5sums
dh_builddeb -a -O--parallel
dpkg-deb --build debian/libkmc-dev ..
dpkg-deb -z1 -Zxz -Sextreme --build debian/.debhelper/kmc/dbgsym-root ..
dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_2.3+dfsg-4_armhf.deb'.
dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_2.3+dfsg-4_armhf.deb'.
dpkg-deb --build debian/kmc ..
dpkg-deb: building package 'kmc' in '../kmc_2.3+dfsg-4_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../kmc_2.3+dfsg-4_armhf.changes
dpkg-genchanges: warning: package kmc-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build kmc-2.3+dfsg
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160409-0539
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
kmc_2.3+dfsg-4_armhf.changes:
-----------------------------
Format: 1.8
Date: Tue, 29 Mar 2016 20:28:59 +0000
Source: kmc
Binary: kmc libkmc-dev
Architecture: armhf
Version: 2.3+dfsg-4
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <sascha@steinbiss.name>
Description:
kmc - count kmers in genomic sequences
libkmc-dev - library to access KMC k-mer count files
Changes:
kmc (2.3+dfsg-4) unstable; urgency=low
.
* Move LDFLAGS to end of linker call.
Thanks to Steve Langasek for the patch (from Ubuntu).
* Enable full hardening.
Checksums-Sha1:
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fceb05e7530ae6d3fc72ce7ce7eb27c482b738db 458928 kmc_2.3+dfsg-4_armhf.deb
342c8ac97609b332ff1740997d43e3947ae520be 25720 libkmc-dev_2.3+dfsg-4_armhf.deb
Checksums-Sha256:
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Files:
5fd00f7197ed0f3c7d2dd023cc98e371 7785692 debug extra kmc-dbgsym_2.3+dfsg-4_armhf.deb
c5ff048fd2e2ed417f7888eccdd404bd 458928 science optional kmc_2.3+dfsg-4_armhf.deb
2d0b57b3514179d074a63e5d3799c05e 25720 libdevel optional libkmc-dev_2.3+dfsg-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
kmc-dbgsym_2.3+dfsg-4_armhf.deb
-------------------------------
new debian package, version 2.0.
size 7785692 bytes: control archive=604 bytes.
478 bytes, 13 lines control
318 bytes, 3 lines md5sums
Package: kmc-dbgsym
Source: kmc
Version: 2.3+dfsg-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8685
Depends: kmc (= 2.3+dfsg-4)
Section: debug
Priority: extra
Homepage: http://sun.aei.polsl.pl/kmc
Description: Debug symbols for kmc
Auto-Built-Package: debug-symbols
Build-Ids: 51360757129db6badc742b9e844baca7b668412f 64ac8753255d23d6de1b6c7918091c6fc9fcd221 8cc1a2e55db401e4d4b2e2ccafff59af58fbbfb8
drwxr-xr-x root/root 0 2016-04-09 05:39 ./
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/lib/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/lib/debug/.build-id/51/
-rw-r--r-- root/root 5367032 2016-04-09 05:38 ./usr/lib/debug/.build-id/51/360757129db6badc742b9e844baca7b668412f.debug
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/lib/debug/.build-id/64/
-rw-r--r-- root/root 3358424 2016-04-09 05:38 ./usr/lib/debug/.build-id/64/ac8753255d23d6de1b6c7918091c6fc9fcd221.debug
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/lib/debug/.build-id/8c/
-rw-r--r-- root/root 154172 2016-04-09 05:38 ./usr/lib/debug/.build-id/8c/c1a2e55db401e4d4b2e2ccafff59af58fbbfb8.debug
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-04-09 05:38 ./usr/share/doc/kmc-dbgsym -> kmc
kmc_2.3+dfsg-4_armhf.deb
------------------------
new debian package, version 2.0.
size 458928 bytes: control archive=1643 bytes.
1610 bytes, 31 lines control
1240 bytes, 18 lines md5sums
Package: kmc
Version: 2.3+dfsg-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2101
Depends: libbz2-1.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6)
Section: science
Priority: optional
Homepage: http://sun.aei.polsl.pl/kmc
Description: count kmers in genomic sequences
The kmc software is designed for counting k-mers (sequences of
consecutive k symbols) in a set of reads. K-mer counting is
important for many bioinformatics applications, e.g. developing de Bruijn
graph assemblers.
.
Building de Bruijn graphs is a commonly used approach for genome
assembly with data from second-generation sequencing.
Unfortunately, sequencing errors (frequent in practice)
result in huge memory requirements for de Bruijn graphs, as well
as long build time. One of the popular approaches to handle this
problem is filtering the input reads in such a way that unique k-mers
(very likely obtained as a result of an error) are discarded.
.
Thus, KMC scans the raw reads and produces a compact representation
of all non-unique reads accompanied with number of their occurrences.
The algorithm implemented in KMC makes use mostly of disk space rather
than RAM, which allows one to use KMC even on rather typical personal
computers. When run on high-end servers (what is necessary for KMC
competitors) it outperforms them in both memory requirements and
speed of computation. The disk space necessary for computation is in
order of the size of input data (usually it is smaller).
drwxr-xr-x root/root 0 2016-04-09 05:38 ./
drwxr-xr-x root/root 0 2016-04-09 05:38 ./bin/
-rwxr-xr-x root/root 1408140 2016-04-09 05:38 ./bin/kmc
-rwxr-xr-x root/root 46896 2016-04-09 05:38 ./bin/kmc_dump
-rwxr-xr-x root/root 665964 2016-04-09 05:38 ./bin/kmc_tools
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/doc/kmc/
-rw-r--r-- root/root 772 2016-03-29 20:38 ./usr/share/doc/kmc/changelog.Debian.gz
-rw-r--r-- root/root 1210 2015-12-22 22:42 ./usr/share/doc/kmc/copyright
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/man/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/man/man1/
-rw-r--r-- root/root 1132 2016-04-09 05:38 ./usr/share/man/man1/kmc.1.gz
-rw-r--r-- root/root 611 2016-04-09 05:38 ./usr/share/man/man1/kmc_dump.1.gz
-rw-r--r-- root/root 815 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-compact.1.gz
-rw-r--r-- root/root 1293 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-complex.1.gz
-rw-r--r-- root/root 991 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-counters_subtract.1.gz
-rw-r--r-- root/root 839 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-dump.1.gz
-rw-r--r-- root/root 1006 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-filter.1.gz
-rw-r--r-- root/root 805 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-histogram.1.gz
-rw-r--r-- root/root 951 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-intersect.1.gz
-rw-r--r-- root/root 952 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-kmers_subtract.1.gz
-rw-r--r-- root/root 863 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-sort.1.gz
-rw-r--r-- root/root 930 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools-union.1.gz
-rw-r--r-- root/root 1181 2016-04-09 05:38 ./usr/share/man/man1/kmc_tools.1.gz
libkmc-dev_2.3+dfsg-4_armhf.deb
-------------------------------
new debian package, version 2.0.
size 25720 bytes: control archive=852 bytes.
614 bytes, 17 lines control
519 bytes, 8 lines md5sums
Package: libkmc-dev
Source: kmc
Version: 2.3+dfsg-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 93
Section: libdevel
Priority: optional
Homepage: http://sun.aei.polsl.pl/kmc
Description: library to access KMC k-mer count files
The kmc software is designed for counting k-mers (sequences of
consecutive k symbols) in a set of reads. K-mer counting is
important for many bioinformatics applications, e.g. developing de Bruijn
graph assemblers.
.
This package contains the C++ library headers for accessing kmc's output
file format.
drwxr-xr-x root/root 0 2016-04-09 05:39 ./
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/include/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/include/kmc/
-rw-r--r-- root/root 5781 2015-09-10 15:25 ./usr/include/kmc/kmc_file.h
-rw-r--r-- root/root 18341 2015-09-10 15:25 ./usr/include/kmc/kmer_api.h
-rw-r--r-- root/root 1022 2015-09-10 15:25 ./usr/include/kmc/kmer_defs.h
-rw-r--r-- root/root 4163 2015-09-10 15:25 ./usr/include/kmc/mmer.h
-rw-r--r-- root/root 85 2015-09-10 15:25 ./usr/include/kmc/stdafx.h
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/lib/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 49732 2016-04-09 05:38 ./usr/lib/arm-linux-gnueabihf/libkmc.a
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-04-09 05:38 ./usr/share/doc/libkmc-dev/
-rw-r--r-- root/root 772 2016-03-29 20:38 ./usr/share/doc/libkmc-dev/changelog.Debian.gz
-rw-r--r-- root/root 1210 2015-12-22 22:42 ./usr/share/doc/libkmc-dev/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 98912
Build-Time: 976
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 407
Job: kmc_2.3+dfsg-4
Machine Architecture: armhf
Package: kmc
Package-Time: 1466
Source-Version: 2.3+dfsg-4
Space: 98912
Status: successful
Version: 2.3+dfsg-4
--------------------------------------------------------------------------------
Finished at 20160409-0539
Build needed 00:24:26, 98912k disc space