Raspbian Package Auto-Building

Build log for kissplice (2.1.0-1) on armhf

kissplice2.1.0-1armhf → 2014-02-11 06:37:49

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org

╔══════════════════════════════════════════════════════════════════════════════╗
║ kissplice 2.1.0-1 (armhf)                                  11 Feb 2014 06:30 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: kissplice
Version: 2.1.0-1
Source Version: 2.1.0-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/kissplice-v_KJUh/kissplice-2.1.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/kissplice-v_KJUh' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-6c71bbc0-afa3-49a6-8a7f-939a56334333' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7254 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8367 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 15.6 MB in 38s (401 kB/s)
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
─────────

Checking available source versions...

Download source files with APT
──────────────────────────────

Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'kissplice' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/kissplice/trunk/
Need to get 1497 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main kissplice 2.1.0-1 (dsc) [2021 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main kissplice 2.1.0-1 (tar) [1491 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main kissplice 2.1.0-1 (diff) [4200 B]
Fetched 1497 kB in 1s (1082 kB/s)
Download complete and in download only mode

Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-BvRB49/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 25 not upgraded.
Need to get 0 B/764 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12149 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9.0), cmake, python, python3, zlib1g-dev
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9.0), cmake, python, python3, zlib1g-dev
dpkg-deb: building package `sbuild-build-depends-kissplice-dummy' in `/«BUILDDIR»/resolver-x3XdxY/apt_archive/sbuild-build-depends-kissplice-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install kissplice build dependencies (apt-based resolver)                    │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils cmake cmake-data debhelper dh-python file gettext gettext-base
  groff-base intltool-debian libarchive13 libasprintf0c2 libcroco3 libcurl3
  libdb5.3 libexpat1 libffi6 libgcrypt11 libglib2.0-0 libgnutls26
  libgpg-error0 libgssapi-krb5-2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 libldap-2.4-2 liblzo2-2 libmagic1 libmpdec2 libnettle4
  libp11-kit0 libpipeline1 libpython-stdlib libpython2.7-minimal
  libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal
  libpython3.3-stdlib librtmp0 libsasl2-2 libsasl2-modules-db libsqlite3-0
  libssh2-1 libssl1.0.0 libtasn1-6 libunistring0 libxml2 man-db mime-support
  po-debconf python python-minimal python2.7 python2.7-minimal python3
  python3-minimal python3.3 python3.3-minimal zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation codeblocks eclipse dh-make gettext-doc
  groff lrzip rng-tools krb5-doc krb5-user less www-browser libmail-box-perl
  python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk
  python3.3-doc
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  ca-certificates libglib2.0-data shared-mime-info krb5-locales
  libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  bsdmainutils cmake cmake-data debhelper dh-python file gettext gettext-base
  groff-base intltool-debian libarchive13 libasprintf0c2 libcroco3 libcurl3
  libdb5.3 libexpat1 libffi6 libgcrypt11 libglib2.0-0 libgnutls26
  libgpg-error0 libgssapi-krb5-2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 libldap-2.4-2 liblzo2-2 libmagic1 libmpdec2 libnettle4
  libp11-kit0 libpipeline1 libpython-stdlib libpython2.7-minimal
  libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal
  libpython3.3-stdlib librtmp0 libsasl2-2 libsasl2-modules-db libsqlite3-0
  libssh2-1 libssl1.0.0 libtasn1-6 libunistring0 libxml2 man-db mime-support
  po-debconf python python-minimal python2.7 python2.7-minimal python3
  python3-minimal python3.3 python3.3-minimal
  sbuild-build-depends-kissplice-dummy zlib1g-dev
0 upgraded, 62 newly installed, 0 to remove and 25 not upgraded.
Need to get 27.2 MB/27.2 MB of archives.
After this operation, 80.2 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.6-1 [24.4 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1f-1 [809 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-5 [962 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.6-1 [961 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.2-1 [29.0 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libdb5.3 armhf 5.3.28-3 [724 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libgpg-error0 armhf 1.12-0.2 [78.9 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libgcrypt11 armhf 1.5.3-3 [231 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-12 [17.4 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libp11-kit0 armhf 0.20.2-1 [65.6 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libtasn1-6 armhf 3.4-3 [42.6 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libgnutls26 armhf 2.12.23-10+b1 [489 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libkeyutils1 armhf 1.5.6-1 [7900 B]
Get:15 http://172.17.0.1/private/ jessie-staging/main libkrb5support0 armhf 1.11.3+dfsg-3+nmu1 [55.0 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libk5crypto3 armhf 1.11.3+dfsg-3+nmu1 [130 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libkrb5-3 armhf 1.11.3+dfsg-3+nmu1 [338 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libgssapi-krb5-2 armhf 1.11.3+dfsg-3+nmu1 [145 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libidn11 armhf 1.28-1 [181 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libsasl2-modules-db armhf 2.1.25.dfsg1-17 [64.9 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libsasl2-2 armhf 2.1.25.dfsg1-17 [104 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libldap-2.4-2 armhf 2.4.31-1+nmu2+b1 [214 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.8.2-1 [423 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libpython2.7-minimal armhf 2.7.6-5 [344 kB]
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Get:28 http://172.17.0.1/private/ jessie-staging/main liblzo2-2 armhf 2.06-1.2 [55.9 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libnettle4 armhf 2.7.1-1 [208 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libarchive13 armhf 3.1.2-7 [297 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main librtmp0 armhf 2.4+20121230.gitdf6c518-1 [58.1 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libssh2-1 armhf 1.4.3-2 [127 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libcurl3 armhf 7.35.0-1 [234 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libmpdec2 armhf 2.4.0-6 [67.1 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libpython3.3-minimal armhf 3.3.4~rc1-1 [418 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.54 [36.4 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libpython3.3-stdlib armhf 3.3.4~rc1-1 [1940 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main python3.3-minimal armhf 3.3.4~rc1-1 [1161 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.2-1 [112 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libpython2.7-stdlib armhf 2.7.6-5 [1823 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main python2.7 armhf 2.7.6-5 [234 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main python-minimal armhf 2.7.5-5 [43.1 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libpython-stdlib armhf 2.7.5-5 [19.8 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main python armhf 2.7.5-5 [180 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main cmake-data all 2.8.12.1-1.1 [1283 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main cmake armhf 2.8.12.1-1.1 [4930 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.2-1 [1137 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20131227 [687 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main python3.3 armhf 3.3.4~rc1-1 [161 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main python3-minimal armhf 3.3.2-17 [38.6 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main libpython3-stdlib armhf 3.3.2-17 [18.8 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main python3 armhf 3.3.2-17 [22.1 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main dh-python all 1.20140128-1 [52.4 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.2.6-1) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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Setting up libkeyutils1:armhf (1.5.6-1) ...
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update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
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Setting up libpython3-stdlib:armhf (3.3.2-17) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
Setting up python3 (3.3.2-17) ...
Setting up dh-python (1.20140128-1) ...
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Processing triggers for libc-bin (2.17-97) ...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.13-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5+rpi1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-14 gcc-4.6_4.6.4-5+rpi1 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5+rpi1 linux-libc-dev_3.12.6-2+rpi1
Package versions: apt_0.9.14.2 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cmake_2.8.12.1-1.1 cmake-data_2.8.12.1-1.1 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-1 cpp-4.6_4.6.4-5+rpi1 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debianutils_4.4 dh-python_1.20140128-1 diffutils_1:3.3-1 dpkg_1.17.5+rpi1 dpkg-dev_1.17.5+rpi1 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-7 g++_4:4.8.2-1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-14 gcc_4:4.8.2-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-5+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-9+rpi1 gcc-4.8_4.8.2-14 gcc-4.8-base_4.8.2-14 gettext_0.18.3.2-1 gettext-base_0.18.3.2-1 gnupg_1.4.16-1 gpgv_1.4.16-1 grep_2.15-2 groff-base_1.22.2-5 gzip_1.6-3 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-45 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.2-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_0.9.14.2 libarchive-extract-perl_0.70-1 libarchive13_3.1.2-7 libasan0_4.8.2-14 libasprintf0c2_0.18.3.2-1 libatomic1_4.8.2-14 libattr1_1:2.4.47-1 libaudit-common_1:2.3.2-3 libaudit1_1:2.3.2-3 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-97 libc-dev-bin_2.17-97 libc6_2.17-97 libc6-dev_2.17-97 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.1-3 libcomerr2_1.42.9-2 libcroco3_0.6.8-2 libcurl3_7.35.0-1 libdb5.1_5.1.29-6 libdb5.3_5.3.28-3 libdbus-1-3_1.7.10-2 libdpkg-perl_1.17.5+rpi1 libexpat1_2.1.0-4 libffi6_3.0.13-12 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-14 libgcc1_1:4.8.2-14 libgcrypt11_1.5.3-3 libgdbm3_1.8.3-12 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.3+dfsg-1 libgnutls26_2.12.23-10+b1 libgomp1_4.8.2-14 libgpg-error0_1.12-0.2 libgssapi-krb5-2_1.11.3+dfsg-3+nmu1 libidn11_1.28-1 libisl10_0.12.1-2 libk5crypto3_1.11.3+dfsg-3+nmu1 libkeyutils1_1.5.6-1 libklibc_2.0.2-1+rpi1 libkmod2_16-2 libkrb5-3_1.11.3+dfsg-3+nmu1 libkrb5support0_1.11.3+dfsg-3+nmu1 libldap-2.4-2_2.4.31-1+nmu2+b1 liblog-message-simple-perl_0.10-1 liblzma5_5.1.1alpha+20120614-2 liblzo2-2_2.06-1.2 libmagic1_1:5.14-2 libmodule-pluggable-perl_5.1-1 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpdec2_2.4.0-6 libmpfr4_3.1.2-1 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnettle4_2.7.1-1 libp11-kit0_0.20.2-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.6-1 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libpython-stdlib_2.7.5-5 libpython2.7-minimal_2.7.6-5 libpython2.7-stdlib_2.7.6-5 libpython3-stdlib_3.3.2-17 libpython3.3-minimal_3.3.4~rc1-1 libpython3.3-stdlib_3.3.4~rc1-1 libreadline6_6.2+dfsg-0.1 librtmp0_2.4+20121230.gitdf6c518-1 libsasl2-2_2.1.25.dfsg1-17 libsasl2-modules-db_2.1.25.dfsg1-17 libselinux1_2.2.2-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libslang2_2.2.4-16 libsqlite3-0_3.8.2-1 libss2_1.42.9-2 libssh2-1_1.4.3-2 libssl1.0.0_1.0.1f-1 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5+rpi1 libswitch-perl_2.16-2 libtasn1-6_3.4-3 libterm-ui-perl_0.42-1 libtimedate-perl_2.3000-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libudev1_204-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libxml2_2.9.1+dfsg1-3 linux-libc-dev_3.12.6-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.6-1 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.5 multiarch-support_2.17-97 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.2-2 perl-base_5.18.2-2 perl-modules_5.18.2-2 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 python_2.7.5-5 python-minimal_2.7.5-5 python2.7_2.7.6-5 python2.7-minimal_2.7.6-5 python3_3.3.2-17 python3-minimal_3.3.2-17 python3.3_3.3.4~rc1-1 python3.3-minimal_3.3.4~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-kissplice-dummy_0.invalid.0 sed_4.2.2-3 sensible-utils_0.0.9 sysv-rc_2.88dsf-45 sysvinit_2.88dsf-45 sysvinit-core_2.88dsf-45 sysvinit-utils_2.88dsf-45 tar_1.26+dfsg-8 tzdata_2013i-1 udev_204-6 util-linux_2.20.1-5.5 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Feb  3 11:25:32 2014 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./kissplice_2.1.0-1.dsc
dpkg-source: info: extracting kissplice in kissplice-2.1.0
dpkg-source: info: unpacking kissplice_2.1.0.orig.tar.gz
dpkg-source: info: unpacking kissplice_2.1.0-1.debian.tar.xz

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

APT_CONFIG=/var/lib/sbuild/apt.conf
COLUMNS=80
CONSOLE=/dev/console
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INIT_VERSION=sysvinit-2.88
LC_ALL=POSIX
LINES=24
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PREVLEVEL=N
PWD=/
RUNLEVEL=2
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-6c71bbc0-afa3-49a6-8a7f-939a56334333
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
init=/sbin/init
previous=N
rootmnt=/root
runlevel=2

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package kissplice
dpkg-buildpackage: source version 2.1.0-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build kissplice-2.1.0
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python3 --with python2
   dh_testdir
   dh_auto_clean
   dh_clean
 debian/rules build-arch
dh build-arch --with python3 --with python2
   dh_testdir -a
   dh_auto_configure -a
-- The CXX compiler identification is GNU 4.8.2
-- The C compiler identification is GNU 4.8.2
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.8") 
-- Configuring done
-- Generating done
-- Build files have been written to: /«PKGBUILDDIR»/obj-arm-linux-gnueabihf
   dh_auto_build -a
make[1]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/«PKGBUILDDIR» -B/«PKGBUILDDIR»/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f CMakeFiles/kissplice.dir/build.make CMakeFiles/kissplice.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR» /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles/kissplice.dir/DependInfo.cmake --color=
Scanning dependencies of target kissplice
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f CMakeFiles/kissplice.dir/build.make CMakeFiles/kissplice.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E copy /«PKGBUILDDIR»/kissplice.py /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/bin/kissplice
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 
[  0%] Built target kissplice
make -f debruijn-v4/CMakeFiles/ks_debruijn4.dir/build.make debruijn-v4/CMakeFiles/ks_debruijn4.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/debruijn-v4 /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4/CMakeFiles/ks_debruijn4.dir/DependInfo.cmake --color=
Scanning dependencies of target ks_debruijn4
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f debruijn-v4/CMakeFiles/ks_debruijn4.dir/build.make debruijn-v4/CMakeFiles/ks_debruijn4.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 19
[  1%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/main.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/main.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/main.cpp
/«PKGBUILDDIR»/debruijn-v4/main.cpp: In function 'int main(int, char**)':
/«PKGBUILDDIR»/debruijn-v4/main.cpp:216:66: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
     fprintf (stderr,"taille cell %lu \n", sizeof(cell<kmer_type>));
                                                                  ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 20
[  2%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Pool.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Pool.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Pool.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 21
[  4%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Bank.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Bank.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp
/«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp: In member function 'void Bank::init(char**, int)':
/«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp:254:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
         strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
                                            ^
/«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp: In member function 'void BinaryBank::open(bool)':
/«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp:675:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
         strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
                                            ^
/«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp: In member function 'void BinaryReads::open(bool)':
/«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp:760:44: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
         strerror_r( errno, buffer, BUFSIZ ); // get string message from errno
                                            ^
/«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()':
/«PKGBUILDDIR»/debruijn-v4/minia/Bank.cpp:922:65: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
         fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer
                                                                 ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 22
[  5%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Bloom.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Bloom.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Bloom.cpp
/«PKGBUILDDIR»/debruijn-v4/minia/Bloom.cpp: In member function 'void Bloom::load(char*)':
/«PKGBUILDDIR»/debruijn-v4/minia/Bloom.cpp:257:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
  fread(blooma, sizeof(unsigned char), nchar, file_data);
                                                        ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 23
[  7%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Hash16.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Hash16.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Hash16.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 24
[  8%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Kmer.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Kmer.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Kmer.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 25
[  9%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Set.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Set.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp: In member function 'void AssocSet::print_total_size()':
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:132:48: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("Assoc set size: %li\n",liste.size());
                                                ^
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:133:103: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("Assoc set capacity: listekmer %li  liste val%li\n",liste.capacity(),liste_value.capacity());
                                                                                                       ^
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:133:103: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<short unsigned int>::size_type {aka unsigned int}' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
           );
           ^
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<short unsigned int>::size_type {aka unsigned int}' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:136:11: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp: In member function 'void AssocPairedSet::print_total_size()':
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:296:55: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("Assoc paired set size: %li\n",liste.size());
                                                       ^
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:297:110: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
     printf("Assoc paired set capacity: listekmer %li  liste val%li\n",liste.capacity(),liste_value.capacity());
                                                                                                              ^
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:297:110: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector<pair_nt_kmer>::size_type {aka unsigned int}' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
            );
            ^
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector<pair_nt_kmer>::size_type {aka unsigned int}' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector<long long unsigned int>::size_type {aka unsigned int}' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)':
/«PKGBUILDDIR»/debruijn-v4/minia/Set.cpp:288:82: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data);
                                                                                  ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 26
[ 11%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Utils.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Utils.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Utils.cpp
/«PKGBUILDDIR»/debruijn-v4/minia/Utils.cpp: In function 'uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)':
/«PKGBUILDDIR»/debruijn-v4/minia/Utils.cpp:434:96: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=]
         printf("Inaccurate estimation, restarting with %d MB RAM\n",(2*nbytes_memory)/1024/1024);
                                                                                                ^
/«PKGBUILDDIR»/debruijn-v4/minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)':
/«PKGBUILDDIR»/debruijn-v4/minia/Utils.cpp:182:42: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
     ftruncate(fileno(F_kmercpt_write), 0); //erase previous file 
                                          ^
/«PKGBUILDDIR»/debruijn-v4/minia/Utils.cpp:194:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
         fread(&cptk, sizeof(cptk), 1, F_kmercpt_read);
                                                      ^
/«PKGBUILDDIR»/debruijn-v4/minia/Utils.cpp:220:45: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
         ftruncate(fileno(F_kmercpt_read), 0); //erase previous file 
                                             ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 27
[ 12%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/SortingCount.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/SortingCount.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/SortingCount.cpp
/«PKGBUILDDIR»/debruijn-v4/minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)':
/«PKGBUILDDIR»/debruijn-v4/minia/SortingCount.cpp:52:50: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
         getcwd(current_path,sizeof(current_path));
                                                  ^
/«PKGBUILDDIR»/debruijn-v4/minia/SortingCount.cpp:247:52: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
         system("echo 3 > /proc/sys/vm/drop_caches");
                                                    ^
/«PKGBUILDDIR»/debruijn-v4/minia/SortingCount.cpp:468:56: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result]
             system("echo 3 > /proc/sys/vm/drop_caches");
                                                        ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 28
[ 14%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/LinearCounter.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/LinearCounter.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/LinearCounter.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 29
[ 15%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Debloom.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Debloom.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Debloom.cpp
/«PKGBUILDDIR»/debruijn-v4/minia/Debloom.cpp: In function 'Set* load_false_positives_cascading4()':
/«PKGBUILDDIR»/debruijn-v4/minia/Debloom.cpp:370:89: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'int' [-Wformat=]
   printf("\nInserted %lld (estimated, %llu) kmers in B3.\n", addKmers, estimated_T2_size);
                                                                                         ^
/«PKGBUILDDIR»/debruijn-v4/minia/Debloom.cpp:394:89: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'int' [-Wformat=]
   printf("\nInserted %lld (estimated, %lld) kmers in B4.\n", addKmers, estimated_T3_size);
                                                                                         ^
/«PKGBUILDDIR»/debruijn-v4/minia/Debloom.cpp:424:115: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'int' [-Wformat=]
   printf("\nInserted %lld (estimated, %lld) kmers in T4.\n\n", addKmers, (uint64_t)fp->false_positives->capacity());
                                                                                                                   ^
/«PKGBUILDDIR»/debruijn-v4/minia/Debloom.cpp: In function 'void end_debloom_partition(bool)':
/«PKGBUILDDIR»/debruijn-v4/minia/Debloom.cpp:30:39: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
  ftruncate(fileno(F_debloom_write), 0); //erase previous file 
                                       ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 30
[ 16%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Traversal.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Traversal.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Traversal.cpp
/«PKGBUILDDIR»/debruijn-v4/minia/Traversal.cpp: In member function 'bool MonumentTraversal::find_starting_kmer(kmer_type, kmer_type&)':
/«PKGBUILDDIR»/debruijn-v4/minia/Traversal.cpp:344:66: warning: format '%d' expects a matching 'int' argument [-Wformat=]
                 if (debug) printf("strand %d shouldnt continue\n");
                                                                  ^
/«PKGBUILDDIR»/debruijn-v4/minia/Traversal.cpp:358:72: warning: format '%d' expects a matching 'int' argument [-Wformat=]
                 if (debug) printf("strand %d nothing more to explore\n");
                                                                        ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 31
[ 18%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/Terminator.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/Terminator.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/Terminator.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 32
[ 19%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/OAHash.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/OAHash.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/OAHash.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 33
[ 21%] Building CXX object debruijn-v4/CMakeFiles/ks_debruijn4.dir/minia/GraphOutput.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/debruijn-v4    -o CMakeFiles/ks_debruijn4.dir/minia/GraphOutput.cpp.o -c /«PKGBUILDDIR»/debruijn-v4/minia/GraphOutput.cpp
/«PKGBUILDDIR»/debruijn-v4/minia/GraphOutput.cpp: In constructor 'GraphOutput::GraphOutput(std::string, int, std::id_els)':
/«PKGBUILDDIR»/debruijn-v4/minia/GraphOutput.cpp:61:117: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
   printf("graph_format=%d first_id_nodes=%d first_id_edges=%d\n", graph_format, first_id_els.node, first_id_els.edge);
                                                                                                                     ^
/«PKGBUILDDIR»/debruijn-v4/minia/GraphOutput.cpp:61:117: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=]
/«PKGBUILDDIR»/debruijn-v4/minia/GraphOutput.cpp: In member function 'void GraphOutput::close()':
/«PKGBUILDDIR»/debruijn-v4/minia/GraphOutput.cpp:106:152: warning: format '%s' expects a matching 'char*' argument [-Wformat=]
             if(!edges || !nodes){fprintf(stderr,"Cannot open file %s, %s or %s, exit\n", json_edges_file_suffix.c_str(), json_nodes_file_suffix.c_str()); exit(1);}
                                                                                                                                                        ^
Linking CXX executable ../lib/kissplice/ks_debruijn4
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_debruijn4.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro CMakeFiles/ks_debruijn4.dir/main.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Pool.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Bank.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Bloom.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Hash16.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Kmer.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Set.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Utils.cpp.o CMakeFiles/ks_debruijn4.dir/minia/SortingCount.cpp.o CMakeFiles/ks_debruijn4.dir/minia/LinearCounter.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Debloom.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Traversal.cpp.o CMakeFiles/ks_debruijn4.dir/minia/Terminator.cpp.o CMakeFiles/ks_debruijn4.dir/minia/OAHash.cpp.o CMakeFiles/ks_debruijn4.dir/minia/GraphOutput.cpp.o  -o ../lib/kissplice/ks_debruijn4 -rdynamic -lz 
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  19 20 21 22 23 24 25 26 27 28 29 30 31 32 33
[ 21%] Built target ks_debruijn4
make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/thirdparty/kissreads/src /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color=
Scanning dependencies of target ks_kissreadsSNPS
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 38
[ 22%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/commons.c
/«PKGBUILDDIR»/thirdparty/kissreads/src/commons.c: In function 'print_rev_comp':
/«PKGBUILDDIR»/thirdparty/kissreads/src/commons.c:119:2: warning: passing argument 1 of 'fprintf' from incompatible pointer type [enabled by default]
  for(i=len-1;i>-1;i--)fprintf(out, "%c",comp[(int)s[i]]);
  ^
In file included from /usr/include/stdio.h:937:0,
                 from /«PKGBUILDDIR»/thirdparty/kissreads/include/commons.h:47,
                 from /«PKGBUILDDIR»/thirdparty/kissreads/src/commons.c:43:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:95:1: note: expected 'struct FILE * __restrict__' but argument is of type 'gzFile'
 fprintf (FILE *__restrict __stream, const char *__restrict __fmt, ...)
 ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 39
[ 23%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c
/«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c: In function 'read_coherence':
/«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c:349:4: warning: passing argument 1 of 'get_next_sequence_for_fastq' from incompatible pointer type [enabled by default]
    read_len = get_next_sequence_for_fastq(reads_file, read, quality,line);
    ^
In file included from /«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c:47:0:
/«PKGBUILDDIR»/thirdparty/kissreads/include/commons.h:85:5: note: expected 'gzFile' but argument is of type 'struct FILE *'
 int get_next_sequence_for_fastq (gzFile file, char * read, char * quality, char * line);
     ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c:351:4: warning: passing argument 1 of 'get_next_fasta_sequence' from incompatible pointer type [enabled by default]
    read_len = get_next_fasta_sequence(reads_file, read,line);
    ^
In file included from /«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c:47:0:
/«PKGBUILDDIR»/thirdparty/kissreads/include/commons.h:83:5: note: expected 'gzFile' but argument is of type 'struct FILE *'
 int get_next_fasta_sequence (gzFile file, char * read, char * line);
     ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 40
[ 25%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/interface_libchash.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 41
[ 26%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashFind':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN'
    LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashFindLast':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN'
    LOAD_AND_RETURN(ht, ht->posLastFind);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashFirstBucket':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1290:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, retval);
   ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashNextBucket':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1300:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, retval);
   ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashDoLoad':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1407:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
    fread(szMagicKey, 1, 4, fp);
         ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1416:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cchKey);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1417:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cItems);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1418:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cDeletedItems);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1421:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, cchKey);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1423:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
    fread(rgchKeys, 1, cchKey, fp);
         ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1428:7: note: in expansion of macro 'READ_UL'
       READ_UL(fp, bck->data);        /* all we need if dataRead is NULL */
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'SparseRead':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:622:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, cBuckets);                /* actually, cBuckets is stored */
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:627:3: note: in expansion of macro 'READ_UL'
   READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
   ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 42
[ 28%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/outputs.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 43
[ 29%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/coherent_algorithm.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 44
[ 30%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/couple.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 45
[ 32%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/fragment_index.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 46
[ 33%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c
/«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c: In function 'main':
/«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c:359:19: warning: assignment makes pointer from integer without a cast [enabled by default]
             found = strstr(reads_file_names[i],"fastq") || strstr(reads_file_names[i],"fq") || strstr(reads_file_names[i],"txt");
                   ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c:364:19: warning: assignment makes pointer from integer without a cast [enabled by default]
             found = strstr(reads_file_names[i],"fastq") || strstr(reads_file_names[i],"fq") || strstr(reads_file_names[i],"txt") || strstr(reads_file_names[i],"fa") || strstr(reads_file_names[i],"fasta") || strstr(reads_file_names[i],"fna");
                   ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c:428:9: warning: passing argument 1 of 'read_coherence' from incompatible pointer type [enabled by default]
         read_coherence(reads_files[i], reads_file_names[i], size_seeds,  min_coverage, results_against_set,  number_of_starters, i, quality, nb_events_per_set,  number_paths_per_event, sam_out, max_substitutions, no_subsutitution_on_central_position);
         ^
In file included from /«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c:46:0:
/«PKGBUILDDIR»/thirdparty/kissreads/include/extension_algorithm.h:52:7: note: expected 'struct FILE *' but argument is of type 'gzFile'
 float read_coherence (FILE * reads_file,
       ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 47
[ 35%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/list.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/list.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 48
[ 36%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/tree.c
Linking C executable ../../../lib/kissplice/ks_kissreadsSNPS
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSNPS.dir/link.txt --verbose=1
/usr/bin/cc  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro CMakeFiles/ks_kissreadsSNPS.dir/commons.c.o CMakeFiles/ks_kissreadsSNPS.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/libchash.c.o CMakeFiles/ks_kissreadsSNPS.dir/outputs.c.o CMakeFiles/ks_kissreadsSNPS.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSNPS.dir/couple.c.o CMakeFiles/ks_kissreadsSNPS.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSNPS.dir/kissReads.c.o CMakeFiles/ks_kissreadsSNPS.dir/list.c.o CMakeFiles/ks_kissreadsSNPS.dir/tree.c.o  -o ../../../lib/kissplice/ks_kissreadsSNPS -rdynamic -lm -lz 
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  38 39 40 41 42 43 44 45 46 47 48
[ 36%] Built target ks_kissreadsSNPS
make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/thirdparty/kissreads/src /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color=
Scanning dependencies of target ks_kissreadsSplice
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 49
[ 38%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/commons.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/commons.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/commons.c
/«PKGBUILDDIR»/thirdparty/kissreads/src/commons.c: In function 'print_rev_comp':
/«PKGBUILDDIR»/thirdparty/kissreads/src/commons.c:119:2: warning: passing argument 1 of 'fprintf' from incompatible pointer type [enabled by default]
  for(i=len-1;i>-1;i--)fprintf(out, "%c",comp[(int)s[i]]);
  ^
In file included from /usr/include/stdio.h:937:0,
                 from /«PKGBUILDDIR»/thirdparty/kissreads/include/commons.h:47,
                 from /«PKGBUILDDIR»/thirdparty/kissreads/src/commons.c:43:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:95:1: note: expected 'struct FILE * __restrict__' but argument is of type 'gzFile'
 fprintf (FILE *__restrict __stream, const char *__restrict __fmt, ...)
 ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 50
[ 39%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c
/«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c: In function 'read_coherence':
/«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c:349:4: warning: passing argument 1 of 'get_next_sequence_for_fastq' from incompatible pointer type [enabled by default]
    read_len = get_next_sequence_for_fastq(reads_file, read, quality,line);
    ^
In file included from /«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c:47:0:
/«PKGBUILDDIR»/thirdparty/kissreads/include/commons.h:85:5: note: expected 'gzFile' but argument is of type 'struct FILE *'
 int get_next_sequence_for_fastq (gzFile file, char * read, char * quality, char * line);
     ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c:351:4: warning: passing argument 1 of 'get_next_fasta_sequence' from incompatible pointer type [enabled by default]
    read_len = get_next_fasta_sequence(reads_file, read,line);
    ^
In file included from /«PKGBUILDDIR»/thirdparty/kissreads/src/extension_algorithm.c:47:0:
/«PKGBUILDDIR»/thirdparty/kissreads/include/commons.h:83:5: note: expected 'gzFile' but argument is of type 'struct FILE *'
 int get_next_fasta_sequence (gzFile file, char * read, char * line);
     ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 51
[ 40%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/interface_libchash.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 52
[ 42%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashFind':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN'
    LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashFindLast':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN'
    LOAD_AND_RETURN(ht, ht->posLastFind);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashFirstBucket':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1290:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, retval);
   ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashNextBucket':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:220:7: note: in expansion of macro 'READ_UL'
       READ_UL((ht)->fpData, cchData);                                         \
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1300:3: note: in expansion of macro 'LOAD_AND_RETURN'
   LOAD_AND_RETURN(ht, retval);
   ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'HashDoLoad':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1407:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
    fread(szMagicKey, 1, 4, fp);
         ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1416:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cchKey);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1417:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cItems);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1418:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, ht->cDeletedItems);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1421:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, cchKey);
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1423:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
    fread(rgchKeys, 1, cchKey, fp);
         ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:1428:7: note: in expansion of macro 'READ_UL'
       READ_UL(fp, bck->data);        /* all we need if dataRead is NULL */
       ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c: In function 'SparseRead':
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:622:4: note: in expansion of macro 'READ_UL'
    READ_UL(fp, cBuckets);                /* actually, cBuckets is stored */
    ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:193:12: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
       fread(&_ul, sizeof(_ul), 1, (fp));   \
            ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/libchash.c:627:3: note: in expansion of macro 'READ_UL'
   READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
   ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 53
[ 43%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/outputs.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 54
[ 45%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/coherent_algorithm.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 55
[ 46%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/couple.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/couple.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 56
[ 47%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/fragment_index.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 57
[ 49%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c
/«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c: In function 'main':
/«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c:359:19: warning: assignment makes pointer from integer without a cast [enabled by default]
             found = strstr(reads_file_names[i],"fastq") || strstr(reads_file_names[i],"fq") || strstr(reads_file_names[i],"txt");
                   ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c:364:19: warning: assignment makes pointer from integer without a cast [enabled by default]
             found = strstr(reads_file_names[i],"fastq") || strstr(reads_file_names[i],"fq") || strstr(reads_file_names[i],"txt") || strstr(reads_file_names[i],"fa") || strstr(reads_file_names[i],"fasta") || strstr(reads_file_names[i],"fna");
                   ^
/«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c:428:9: warning: passing argument 1 of 'read_coherence' from incompatible pointer type [enabled by default]
         read_coherence(reads_files[i], reads_file_names[i], size_seeds,  min_coverage, results_against_set,  number_of_starters, i, quality, nb_events_per_set,  number_paths_per_event, sam_out, max_substitutions, no_subsutitution_on_central_position);
         ^
In file included from /«PKGBUILDDIR»/thirdparty/kissreads/src/kissReads.c:46:0:
/«PKGBUILDDIR»/thirdparty/kissreads/include/extension_algorithm.h:52:7: note: expected 'struct FILE *' but argument is of type 'gzFile'
 float read_coherence (FILE * reads_file,
       ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 58
[ 50%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/list.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/list.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/list.c
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 59
[ 52%] Building C object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/tree.c.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cc   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/thirdparty/kissreads/include    -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o   -c /«PKGBUILDDIR»/thirdparty/kissreads/src/tree.c
Linking C executable ../../../lib/kissplice/ks_kissreadsSplice
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_kissreadsSplice.dir/link.txt --verbose=1
/usr/bin/cc  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro CMakeFiles/ks_kissreadsSplice.dir/commons.c.o CMakeFiles/ks_kissreadsSplice.dir/extension_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/libchash.c.o CMakeFiles/ks_kissreadsSplice.dir/outputs.c.o CMakeFiles/ks_kissreadsSplice.dir/coherent_algorithm.c.o CMakeFiles/ks_kissreadsSplice.dir/couple.c.o CMakeFiles/ks_kissreadsSplice.dir/fragment_index.c.o CMakeFiles/ks_kissreadsSplice.dir/kissReads.c.o CMakeFiles/ks_kissreadsSplice.dir/list.c.o CMakeFiles/ks_kissreadsSplice.dir/tree.c.o  -o ../../../lib/kissplice/ks_kissreadsSplice -rdynamic -lm -lz 
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  49 50 51 52 53 54 55 56 57 58 59
[ 52%] Built target ks_kissreadsSplice
make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color=
Scanning dependencies of target ks_bubble_enumeration
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 1
[ 53%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o -c /«PKGBUILDDIR»/modules/BubbleEnumeration.cpp
In file included from /«PKGBUILDDIR»/modules/BubbleEnumeration.cpp:59:0:
/«PKGBUILDDIR»/modules/BubbleEnumeration.h: In function 'bool read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = EdgeLoader; TNodeFunctor = NodeLoader]':
/«PKGBUILDDIR»/modules/BubbleEnumeration.h:84:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(info_file, "%d \n",&bcc_size );
   ^
/«PKGBUILDDIR»/modules/BubbleEnumeration.h:85:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(info_file, "%d \n",&records_per_file );
   ^
In file included from /«PKGBUILDDIR»/modules/BubbleEnumeration.cpp:58:0:
/«PKGBUILDDIR»/modules/CGraph.h: In function 'bool read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = NodeLoader; FILE = _IO_FILE]':
/«PKGBUILDDIR»/modules/CGraph.h:252:63: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node);
                                                               ^
/«PKGBUILDDIR»/modules/CGraph.h:253:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file_node, "%d \n",&written_lines_before );
   ^
/«PKGBUILDDIR»/modules/CGraph.h:254:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file_node, "%d \n",&written_lines_for_record );
   ^
/«PKGBUILDDIR»/modules/CGraph.h:265:53: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file);  
                                                     ^
/«PKGBUILDDIR»/modules/CGraph.h: In member function 'void NodeLoader::operator()(FILE*, int)':
/«PKGBUILDDIR»/modules/CGraph.h:215:42: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fgets(buffer, 100 * MAX, node_file);      
                                          ^
/«PKGBUILDDIR»/modules/CGraph.h: In function 'void read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = EdgeLoader; FILE = _IO_FILE]':
/«PKGBUILDDIR»/modules/CGraph.h:330:63: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge);
                                                               ^
/«PKGBUILDDIR»/modules/CGraph.h:331:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file_edge, "%d \n",&written_lines_before );
   ^
/«PKGBUILDDIR»/modules/CGraph.h:332:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
   ^
/«PKGBUILDDIR»/modules/CGraph.h:339:51: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file);  
                                                   ^
/«PKGBUILDDIR»/modules/CGraph.h: In member function 'void EdgeLoader::operator()(FILE*, int)':
/«PKGBUILDDIR»/modules/CGraph.h:294:37: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
  fgets(buffer, 100 * MAX, edge_file); 
                                     ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 2
[ 54%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o -c /«PKGBUILDDIR»/modules/CycleCompression.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 3
[ 56%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o -c /«PKGBUILDDIR»/modules/NGraph.cpp
/«PKGBUILDDIR»/modules/NGraph.cpp: In function 'void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/«PKGBUILDDIR»/modules/NGraph.cpp:1050:102: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
                                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1051:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_before );
                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1052:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_for_record );
                                                            ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1061:86: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file);
                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1065:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     fgets(buffer, 100 * MAX, data_file);
                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp: In function 'void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/«PKGBUILDDIR»/modules/NGraph.cpp:1097:102: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
                                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1098:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_before );
                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1099:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_for_record );
                                                            ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1108:88: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); }
                                                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1112:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     fgets(buffer, 100 * MAX, data_file);
                                        ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 4
[ 57%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o -c /«PKGBUILDDIR»/modules/CGraph.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 5
[ 59%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o -c /«PKGBUILDDIR»/modules/CEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 6
[ 60%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o -c /«PKGBUILDDIR»/modules/LabelledCEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 7
[ 61%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o -c /«PKGBUILDDIR»/modules/NNode.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 8
[ 63%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o -c /«PKGBUILDDIR»/modules/NEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 9
[ 64%] Building CXX object modules/CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o -c /«PKGBUILDDIR»/modules/Utils.cpp
Linking CXX executable ../lib/kissplice/ks_bubble_enumeration
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_bubble_enumeration.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro CMakeFiles/ks_bubble_enumeration.dir/BubbleEnumeration.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CycleCompression.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CGraph.cpp.o CMakeFiles/ks_bubble_enumeration.dir/CEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/LabelledCEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NNode.cpp.o CMakeFiles/ks_bubble_enumeration.dir/NEdge.cpp.o CMakeFiles/ks_bubble_enumeration.dir/Utils.cpp.o  -o ../lib/kissplice/ks_bubble_enumeration -rdynamic 
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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[ 64%] Built target ks_bubble_enumeration
make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color=
Scanning dependencies of target ks_clean_duplicates
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 10
[ 66%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o -c /«PKGBUILDDIR»/modules/CleanDuplicates.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 11
[ 67%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o -c /«PKGBUILDDIR»/modules/CycleCompression.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 12
[ 69%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o -c /«PKGBUILDDIR»/modules/NGraph.cpp
/«PKGBUILDDIR»/modules/NGraph.cpp: In function 'void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/«PKGBUILDDIR»/modules/NGraph.cpp:1050:102: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
                                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1051:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_before );
                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1052:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_for_record );
                                                            ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1061:86: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file);
                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1065:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     fgets(buffer, 100 * MAX, data_file);
                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp: In function 'void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/«PKGBUILDDIR»/modules/NGraph.cpp:1097:102: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
                                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1098:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_before );
                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1099:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_for_record );
                                                            ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1108:88: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); }
                                                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1112:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     fgets(buffer, 100 * MAX, data_file);
                                        ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 13
[ 70%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o -c /«PKGBUILDDIR»/modules/CGraph.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 14
[ 71%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o -c /«PKGBUILDDIR»/modules/CEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 15
[ 73%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o -c /«PKGBUILDDIR»/modules/LabelledCEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 16
[ 74%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o -c /«PKGBUILDDIR»/modules/NNode.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 17
[ 76%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o -c /«PKGBUILDDIR»/modules/NEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 18
[ 77%] Building CXX object modules/CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o -c /«PKGBUILDDIR»/modules/Utils.cpp
Linking CXX executable ../lib/kissplice/ks_clean_duplicates
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_clean_duplicates.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro CMakeFiles/ks_clean_duplicates.dir/CleanDuplicates.cpp.o CMakeFiles/ks_clean_duplicates.dir/CycleCompression.cpp.o CMakeFiles/ks_clean_duplicates.dir/NGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CGraph.cpp.o CMakeFiles/ks_clean_duplicates.dir/CEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/LabelledCEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/NNode.cpp.o CMakeFiles/ks_clean_duplicates.dir/NEdge.cpp.o CMakeFiles/ks_clean_duplicates.dir/Utils.cpp.o  -o ../lib/kissplice/ks_clean_duplicates -rdynamic 
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  10 11 12 13 14 15 16 17 18
[ 77%] Built target ks_clean_duplicates
make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color=
Scanning dependencies of target ks_error_removal
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 34
[ 78%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o -c /«PKGBUILDDIR»/modules/ErrorRemoval.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 35
[ 80%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/CEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o -c /«PKGBUILDDIR»/modules/CEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 36
[ 81%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o -c /«PKGBUILDDIR»/modules/LabelledCEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 37
[ 83%] Building CXX object modules/CMakeFiles/ks_error_removal.dir/Utils.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_error_removal.dir/Utils.cpp.o -c /«PKGBUILDDIR»/modules/Utils.cpp
Linking CXX executable ../lib/kissplice/ks_error_removal
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_error_removal.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro CMakeFiles/ks_error_removal.dir/ErrorRemoval.cpp.o CMakeFiles/ks_error_removal.dir/CEdge.cpp.o CMakeFiles/ks_error_removal.dir/LabelledCEdge.cpp.o CMakeFiles/ks_error_removal.dir/Utils.cpp.o  -o ../lib/kissplice/ks_error_removal -rdynamic 
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  34 35 36 37
[ 83%] Built target ks_error_removal
make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color=
Scanning dependencies of target ks_print_bcc
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 60
[ 84%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c /«PKGBUILDDIR»/modules/PrintBcc.cpp
In file included from /«PKGBUILDDIR»/modules/PrintBcc.cpp:51:0:
/«PKGBUILDDIR»/modules/BubbleEnumeration.h: In function 'bool read_edges_and_nodes_withoptimIO(char*, char*, char*, char*, char*, int*, TEdgeFunctor, TNodeFunctor&) [with TEdgeFunctor = Printer; TNodeFunctor = Printer]':
/«PKGBUILDDIR»/modules/BubbleEnumeration.h:84:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(info_file, "%d \n",&bcc_size );
   ^
/«PKGBUILDDIR»/modules/BubbleEnumeration.h:85:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(info_file, "%d \n",&records_per_file );
   ^
In file included from /«PKGBUILDDIR»/modules/PrintBcc.cpp:50:0:
/«PKGBUILDDIR»/modules/CGraph.h: In function 'bool read_node_noncontigous_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = Printer; FILE = _IO_FILE]':
/«PKGBUILDDIR»/modules/CGraph.h:252:63: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node);
                                                               ^
/«PKGBUILDDIR»/modules/CGraph.h:253:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file_node, "%d \n",&written_lines_before );
   ^
/«PKGBUILDDIR»/modules/CGraph.h:254:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file_node, "%d \n",&written_lines_for_record );
   ^
/«PKGBUILDDIR»/modules/CGraph.h:265:53: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file);  
                                                     ^
/«PKGBUILDDIR»/modules/PrintBcc.cpp: In member function 'void Printer::operator()(FILE*, int)':
/«PKGBUILDDIR»/modules/PrintBcc.cpp:64:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
       fgets(buffer, 100 * MAX, in_file);
                                        ^
In file included from /«PKGBUILDDIR»/modules/PrintBcc.cpp:50:0:
/«PKGBUILDDIR»/modules/CGraph.h: In function 'void read_edge_file_withoptimIO(FILE*, FILE*, int*, int*, TFunctor&) [with TFunctor = Printer; FILE = _IO_FILE]':
/«PKGBUILDDIR»/modules/CGraph.h:330:63: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge);
                                                               ^
/«PKGBUILDDIR»/modules/CGraph.h:331:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file_edge, "%d \n",&written_lines_before );
   ^
/«PKGBUILDDIR»/modules/CGraph.h:332:3: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
   ^
/«PKGBUILDDIR»/modules/CGraph.h:339:51: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file);  
                                                   ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 61
[ 85%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /«PKGBUILDDIR»/modules/Utils.cpp
Linking CXX executable ../lib/kissplice/ks_print_bcc
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_print_bcc.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o  -o ../lib/kissplice/ks_print_bcc -rdynamic 
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color=
Scanning dependencies of target ks_run_modules
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make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build
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/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 62
[ 87%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/run.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/run.cpp.o -c /«PKGBUILDDIR»/modules/run.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 63
[ 88%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /«PKGBUILDDIR»/modules/CycleCompression.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 64
[ 90%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NGraph.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o -c /«PKGBUILDDIR»/modules/NGraph.cpp
/«PKGBUILDDIR»/modules/NGraph.cpp: In function 'void read_graph_edges_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/«PKGBUILDDIR»/modules/NGraph.cpp:1050:102: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
                                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1051:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_before );
                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1052:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_for_record );
                                                            ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1061:86: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, data_file);
                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1065:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     fgets(buffer, 100 * MAX, data_file);
                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp: In function 'void read_graph_nodes_new(NGraph&, FILE*, FILE*, FILE*, int*, int*)':
/«PKGBUILDDIR»/modules/NGraph.cpp:1097:102: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file);
                                                                                                      ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1098:56: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_before );
                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1099:60: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
   fscanf(contents_file, "%d \n",&written_lines_for_record );
                                                            ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1108:88: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
   for (int i = 0; i < written_lines_before ; i++) { fgets(buffer, 100 * MAX, data_file); }
                                                                                        ^
/«PKGBUILDDIR»/modules/NGraph.cpp:1112:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
     fgets(buffer, 100 * MAX, data_file);
                                        ^
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 65
[ 91%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CGraph.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o -c /«PKGBUILDDIR»/modules/CGraph.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 66
[ 92%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o -c /«PKGBUILDDIR»/modules/CEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 67
[ 94%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o -c /«PKGBUILDDIR»/modules/LabelledCEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 68
[ 95%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NNode.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/NNode.cpp.o -c /«PKGBUILDDIR»/modules/NNode.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 69
[ 97%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/NEdge.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o -c /«PKGBUILDDIR»/modules/NEdge.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 70
[ 98%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o -c /«PKGBUILDDIR»/modules/SplitBcc.cpp
/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 71
[100%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/Utils.cpp.o
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/c++    -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -I/«PKGBUILDDIR»/modules    -o CMakeFiles/ks_run_modules.dir/Utils.cpp.o -c /«PKGBUILDDIR»/modules/Utils.cpp
Linking CXX executable ../lib/kissplice/ks_run_modules
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules && /usr/bin/cmake -E cmake_link_script CMakeFiles/ks_run_modules.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2    -Wl,-z,relro CMakeFiles/ks_run_modules.dir/run.cpp.o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o CMakeFiles/ks_run_modules.dir/NGraph.cpp.o CMakeFiles/ks_run_modules.dir/CGraph.cpp.o CMakeFiles/ks_run_modules.dir/CEdge.cpp.o CMakeFiles/ks_run_modules.dir/LabelledCEdge.cpp.o CMakeFiles/ks_run_modules.dir/NNode.cpp.o CMakeFiles/ks_run_modules.dir/NEdge.cpp.o CMakeFiles/ks_run_modules.dir/SplitBcc.cpp.o CMakeFiles/ks_run_modules.dir/Utils.cpp.o  -o ../lib/kissplice/ks_run_modules -rdynamic 
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make -f debruijn-v4/CMakeFiles/ks_debruijn4.dir/build.make debruijn-v4/CMakeFiles/ks_debruijn4.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/debruijn-v4 /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4 /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/debruijn-v4/CMakeFiles/ks_debruijn4.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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[ 21%] Built target ks_debruijn4
make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/thirdparty/kissreads/src /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/thirdparty/kissreads/src /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build.make thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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make -f modules/CMakeFiles/ks_bubble_enumeration.dir/build.make modules/CMakeFiles/ks_bubble_enumeration.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_bubble_enumeration.dir/DependInfo.cmake --color=
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/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  1 2 3 4 5 6 7 8 9
[ 64%] Built target ks_bubble_enumeration
make -f modules/CMakeFiles/ks_clean_duplicates.dir/build.make modules/CMakeFiles/ks_clean_duplicates.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_clean_duplicates.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  10 11 12 13 14 15 16 17 18
[ 77%] Built target ks_clean_duplicates
make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_error_removal.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f modules/CMakeFiles/ks_error_removal.dir/build.make modules/CMakeFiles/ks_error_removal.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
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/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  34 35 36 37
[ 83%] Built target ks_error_removal
make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_print_bcc.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f modules/CMakeFiles/ks_print_bcc.dir/build.make modules/CMakeFiles/ks_print_bcc.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for `modules/CMakeFiles/ks_print_bcc.dir/build'.
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/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  60 61
[ 85%] Built target ks_print_bcc
make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/depend
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«PKGBUILDDIR» /«PKGBUILDDIR»/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/modules/CMakeFiles/ks_run_modules.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make -f modules/CMakeFiles/ks_run_modules.dir/build.make modules/CMakeFiles/ks_run_modules.dir/build
make[3]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for `modules/CMakeFiles/ks_run_modules.dir/build'.
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/usr/bin/cmake -E cmake_progress_report /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles  62 63 64 65 66 67 68 69 70 71
[100%] Built target ks_run_modules
make[2]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for `preinstall'.
make[2]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/bin/kissplice
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/lib/kissplice/ks_debruijn4
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/lib/kissplice/ks_kissreadsSNPS
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/lib/kissplice/ks_kissreadsSplice
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/lib/kissplice/ks_clean_duplicates
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/lib/kissplice/ks_bubble_enumeration
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/lib/kissplice/ks_run_modules
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/lib/kissplice/ks_error_removal
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/lib/kissplice/ks_print_bcc
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/share/man/man1/kissplice.1
-- Installing: /«PKGBUILDDIR»/debian/kissplice/usr/share/doc/kissplice/user_guide.pdf
make[1]: Leaving directory `/«PKGBUILDDIR»/obj-arm-linux-gnueabihf'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_python3 -a
I: dh_python3 tools:100: replacing shebang in debian/kissplice/usr/bin/kissplice
E: dh_python3 tools:93: fix_shebang (debian/kissplice/usr/lib/kissplice/ks_bubble_enumeration): cannot parse binary file
E: dh_python3 tools:93: fix_shebang (debian/kissplice/usr/lib/kissplice/ks_clean_duplicates): cannot parse binary file
E: dh_python3 tools:93: fix_shebang (debian/kissplice/usr/lib/kissplice/ks_debruijn4): cannot parse binary file
E: dh_python3 tools:93: fix_shebang (debian/kissplice/usr/lib/kissplice/ks_error_removal): cannot parse binary file
E: dh_python3 tools:93: fix_shebang (debian/kissplice/usr/lib/kissplice/ks_kissreadsSNPS): cannot parse binary file
E: dh_python3 tools:93: fix_shebang (debian/kissplice/usr/lib/kissplice/ks_kissreadsSplice): cannot parse binary file
E: dh_python3 tools:93: fix_shebang (debian/kissplice/usr/lib/kissplice/ks_print_bcc): cannot parse binary file
E: dh_python3 tools:93: fix_shebang (debian/kissplice/usr/lib/kissplice/ks_run_modules): cannot parse binary file
   dh_python2 -a
   dh_perl -a
   dh_link -a
   debian/rules override_dh_compress
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_compress --exclude=.pdf
make[1]: Leaving directory `/«PKGBUILDDIR»'
   dh_fixperms -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package kissplice: unused substitution variable ${python3:Depends}
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package `kissplice' in `../kissplice_2.1.0-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../kissplice_2.1.0-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build kissplice-2.1.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140211-0642

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


kissplice_2.1.0-1_armhf.changes:
────────────────────────────────

Format: 1.8
Date: Fri, 31 Jan 2014 18:13:40 +0100
Source: kissplice
Binary: kissplice
Architecture: armhf
Version: 2.1.0-1
Distribution: jessie-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description: 
 kissplice  - Detection of various kinds of polymorphisms in RNA-seq data
Changes: 
 kissplice (2.1.0-1) unstable; urgency=medium
 .
   * New upstream version
   * cme fix dpkg-control
Checksums-Sha1: 
 25e8f2add940d328f275342690c619833e2db60b 1283366 kissplice_2.1.0-1_armhf.deb
Checksums-Sha256: 
 ff9c2093cbcdbef480d9f24a17e826cf6d976708e07c824db719a97ab6646d05 1283366 kissplice_2.1.0-1_armhf.deb
Files: 
 91cb0aab1d94ed5375264ec809bfc4a4 1283366 science optional kissplice_2.1.0-1_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


kissplice_2.1.0-1_armhf.deb
───────────────────────────

 new debian package, version 2.0.
 size 1283366 bytes: control archive=1206 bytes.
     872 bytes,    17 lines      control              
    1025 bytes,    15 lines      md5sums              
 Package: kissplice
 Version: 2.1.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1943
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.6), zlib1g (>= 1:1.2.3.4), python:any
 Section: science
 Priority: optional
 Homepage: http://kissplice.prabi.fr/
 Description: Detection of various kinds of polymorphisms in RNA-seq data
  KisSplice is a piece of software that enables the analysis of RNA-seq data
  with or without a reference genome. It is an exact local transcriptome
  assembler that allows one to identify SNPs, indels and alternative splicing
  events. It can deal with an arbitrary number of biological conditions, and
  will quantify each variant in each condition.
  It has been tested on Illumina datasets of up to 1G reads.
  Its memory consumption is around 5Gb for 100M reads.

drwxr-xr-x root/root         0 2014-02-11 06:41 ./
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/bin/
-rwxr-xr-x root/root     34380 2014-02-11 06:41 ./usr/bin/kissplice
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/lib/
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/lib/kissplice/
-rwxr-xr-x root/root    145380 2014-02-11 06:41 ./usr/lib/kissplice/ks_debruijn4
-rwxr-xr-x root/root     54864 2014-02-11 06:41 ./usr/lib/kissplice/ks_kissreadsSNPS
-rwxr-xr-x root/root     54864 2014-02-11 06:41 ./usr/lib/kissplice/ks_kissreadsSplice
-rwxr-xr-x root/root     91828 2014-02-11 06:41 ./usr/lib/kissplice/ks_clean_duplicates
-rwxr-xr-x root/root     91824 2014-02-11 06:41 ./usr/lib/kissplice/ks_bubble_enumeration
-rwxr-xr-x root/root     83624 2014-02-11 06:41 ./usr/lib/kissplice/ks_run_modules
-rwxr-xr-x root/root     26212 2014-02-11 06:41 ./usr/lib/kissplice/ks_error_removal
-rwxr-xr-x root/root     13872 2014-02-11 06:41 ./usr/lib/kissplice/ks_print_bcc
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/share/
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/share/man/
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/share/man/man1/
-rw-r--r-- root/root      1170 2014-02-11 06:41 ./usr/share/man/man1/kissplice.1.gz
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/share/doc/
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/share/doc/kissplice/
-rw-r--r-- root/root   1384286 2014-01-28 16:49 ./usr/share/doc/kissplice/user_guide.pdf
-rw-r--r-- root/root      2877 2013-09-12 08:58 ./usr/share/doc/kissplice/copyright
-rw-r--r-- root/root       258 2014-02-03 11:22 ./usr/share/doc/kissplice/changelog.Debian.gz
-rw-r--r-- root/root      2452 2014-01-22 17:09 ./usr/share/doc/kissplice/changelog.gz
drwxr-xr-x root/root         0 2014-02-11 06:41 ./usr/share/doc-base/
-rw-r--r-- root/root       601 2013-09-12 08:58 ./usr/share/doc-base/kissplice


┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 20052
Build-Time: 314
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 332
Job: kissplice_2.1.0-1
Machine Architecture: armhf
Package: kissplice
Package-Time: 706
Source-Version: 2.1.0-1
Space: 20052
Status: successful
Version: 2.1.0-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20140211-0642
Build needed 00:11:46, 20052k disc space